Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTSVWGKSILALVFTFMCSLAISAASPKDYLYDTKEENGKIISKVVFLQENGLLNKQVRYEFQYNENGKVSEKKAFRWDRTNDEWVPFYQITYQYDDQSGEIKTNYGMWDKKKKNFSLNVQNMIIPSTNYEEIFS
4GKY Chain:A ((141-234))
-------------------------------FFDSFDNDGKKNNPAIVIIGN---NGQIHYDHQ--NDGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNGF-TPDKNDYEFCAKVENMIIPAQGH-----
General information:
TITO was launched using:
RESULT:
Template:
4GKY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 40948 for 578 contacts (70.8/contact) +
2D Compatibility (PS) -9814 + (NN) -2216 + (LL) 3184
1D Compatibility (HY) -1600 + (ID) 1200
Total energy: 29302.0 ( 50.70 by residue)
QMean score : 0.176
(partial model without unconserved sides chains):
PDB file :
Tito_4GKY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GKY-query.scw
PDB file :
Tito_Scwrl_4GKY.pdb
: