Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTDAAVSFAKDFLAGGVAAAISKTAVAPIERVKLLLQVQ-HASKQITADKQYKGIIDCVVRIPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKRTQFWLYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGAEREFRGLGDCLVKIYKSDGIKGLYQGFNVSVQGIIIYRAAYFGIYDTAKGM-LPDPKNTHIVISWMIAQTVTAVAGLTSYPFDTVRRRMMMQSGRKGTDIMYTGTLDCWRKIARDEGGKAFFKGAWSNVLRGMGGAFVLVLYDEIKKYT
4C9Q Chain:B ((25-313))-----TNFAINFLMGGVSAAIAKTAASPIERVKILIQNQDEMIKQGTLDKKYSGIVDCFKRTAKQEGLISFWRGNTANVIRYFPTQALNFAFKDKIKLMF--GFKKEEGYGKWFAGNLASGGAAGALSLLFVYSLDFARTRLAADA-----ARQFNGLTDVYKKTLKSDGIAGLYRGFMPSVVGIVVYRGLYFGMFDSLKPLV-------SFLASFLLGWVVTTGASTCSYPLDTVRRRMMMTSGQA---VKYNGAIDCLKKIVASEGVGSLFKGCGANILRSVAGAGVISMYDQLQMIL


General information:
TITO was launched using:
RESULT:

Template: 4C9Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86010 for 2050 contacts (-42.0/contact) +
2D Compatibility (PS) -28035 + (NN) 1847 + (LL) 144
1D Compatibility (HY) -27600 + (ID) 7850
Total energy: -147504.0 ( -71.95 by residue)
QMean score : 0.201

(partial model without unconserved sides chains):
PDB file : Tito_4C9Q.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4C9Q-query.scw
PDB file : Tito_Scwrl_4C9Q.pdb: