Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAAATAAAALAAADPPPAMPQAAGAGGPTTRRDFYWLRSFLAGGIAGCCAKTTVAPLDRVKVLLQAHNHHY------KHLGVFSALRAVPQKEGFLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTLITTKLG-----ISGHVHRLMAGSMAGMTAVICTYPLDMVRVRLAFQVKG---EHSYTGIIHAFKTIYAKEGGFFGFYRGLMPTILGMAPYAGVSFFTFGTLKSVGLSHAPTLLGRPSSDNPNVLVLKTHVNLLCGGVAGAIAQTISYPFDVTRRRMQLGTVLP-EFEKCLTMRDTMKYVYGHHGIRKGLYRGLSLNYIRCIPSQAVAFTTYELMKQFFHLN |
| 1OKC Chain:A ((2-293)) | ------------------------------DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKI-FKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKN---------------VHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEG-PKAFFKGAWSNVLRGMG-GAFVLVLYDEI------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1OKC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -123516 for 2069 contacts (-59.7/contact) +
2D Compatibility (PS) -28254 + (NN) 5737 + (LL) 2768
1D Compatibility (HY) -16800 + (ID) 4050
Total energy: -164115.0 ( -79.32 by residue)
QMean score : 0.200
|
|
|