Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRSSLAPGVWFFRAFSRDSWFRGLILLLTFLIYACYHMSRKPISIVKSRLHQNCSEQIKPINDTHSLNDTMWCSWAPFDKDNYKELLGGVDNAFLIAYAIGMFISGVFGERLPLRYYLSAGMLLSGLFTSLFGLGYFWNIHELWYFVVIQVCNGLVQTTGWPSVVTCVGNWFGKGKRGFIMGIWNSHTSVGNILGSLIAGIWVNGQWGLSFIVPGIITAVMGVITFLFLIEHPEDVDCAPPQHHGEPAENQDNPEDPGNSPCSIRESGLETVAKCSKGPCEEPAAISFFGALRIPGVVEFSLCLLFAKLVSYTFLYWLPLYIANVAHFSAKEAGDLSTLFDVGGIIGGIVAGLVSDYTNGRATTCCVMLILAAPMMFLYNYIGQDGIASSIVMLIICGGLVNGPYALITTA-VSADLG--THKSLKGNAKALSTVTAIIDGTGSIGAALGPLLA---GLISPTGWNNVFYMLISADVLACLLLCRLVYKEILAWKVSLSRGSGYKEI |
| 4PYP Chain:A ((71-201)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IFSVGGMIGSFSVGLFVNRF-GRRNSMLMMNLLAFVSAVL---MGFSKLGKSFEMLIL-GRFIIGVYCGLTTGFVPMYVGEVSPTALRG---ALGTLH-------QLGIVVGILIAQVFGLDSIMGNKDLWPLLLSIIFIPALLQCIVLPFCPESPRFLLINRNEENRA |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PYP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -88773 for 836 contacts (-106.2/contact) +
2D Compatibility (PS) -12519 + (NN) 2082 + (LL) 21576
1D Compatibility (HY) -14000 + (ID) 2200
Total energy: -93834.0 ( -112.24 by residue)
QMean score : 0.019
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