Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MMKLARKSVPFIIAVAL----LAACLLAVGLSPLVLPDYKGTIEEREQPQNFNLLYLNSGEELNLYPWNLYTGQEQELFEEEIVSFAAN------SVRILGGGSWTDEELYPLIKFRYS-GQDLRFLKDMALTEKDGRRYLVNMALDPNGLCYFSYVNQDEREATADEMDQALGKLQEDWEKFLSDPLPADSEVDLYEEKPSGSYQLDDGELKTDNAFYMFFMRCQMLSDQMRKEQY---SDYIGDNLYTIW---------------ELVLKSEFTSLSYDNHIYAMYSNDGGTSMVLIYSPIEERFVGFSLKY |
| 3IT8 Chain:D ((1-299)) | ------ITLKYNYTVTLKDDGLYDGVFYDHYNDQLVTKISYNHETRHGNVNFRADWFNISRSPHTPGNDYNFNFWYSLMKETLEEINKNDSTKTTSLSLITGCYETGLLFGSYGYVETANGPLARYHTGDKRFTKMTHKGFPKVGMLTVKNTLWKDVKAYLGGFEYMGCSLAILDYQKMAKGKIPKDTTPTVKVT--------GNELEDGNMTLECTVNSFYPP-DVITKWIESEHFKGEYKYVNGRYYPEWGRKSNYEPGEPGFPWNIKKDKDANTYSLTDLVRTTSKMSSQPVCVVFHDTLEAQVYTCSEGC |
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General information:
TITO was launched using:
| RESULT:
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Template: 3IT8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -52889 for 2086 contacts (-25.4/contact) +
2D Compatibility (PS) -27649 + (NN) 4594 + (LL) 1156
1D Compatibility (HY) -9200 + (ID) 1650
Total energy: -85638.0 ( -41.05 by residue)
QMean score : 0.116
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