Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ---------------------------MKKNSLYIISS---LFFACV---LFVYATATNFQNSTSARQVKTETYTNTVTNVPID-----IRYNSDKYFISGFASE----VSVVLTGANRLSLASEMQE-STRKFK-------------------VTADLTDAGVGTIEVPLSIEDLPN-----GLTAVA-TPQKITVKIGKK----AQK----DKVKIVPEIDPSQIDSRVQIENVM-VSDKEVSI---TSDQETLDRIDKIIAVLPTSER----ITGNY----SGSVP-------LQAIDRNGVVLPAVI--TPFDTIMKVT-----TKPVAPSSSTSNSSTSSSSETSSSTKATSSKTN-------------------- |
3FHC Chain:A ((9-405)) | IPEREMKDFQFRALKKVRIFDSPEELPKERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTNAPVLMLLSTDGVLCPFYMIN |
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General information:
TITO was launched using:
| RESULT:
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Template: 3FHC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -67302 for 1621 contacts (-41.5/contact) +
2D Compatibility (PS) -28073 + (NN) -3415 + (LL) 0
1D Compatibility (HY) -12800 + (ID) 2600
Total energy: -114190.0 ( -70.44 by residue)
QMean score : 0.344
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