Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | -------MKKMEKKWPFVFNGIVIFCLILLI-LGMRW-QAKKEESEVLNVTESLQKESEITSFSEEEEAVLYMLSALKKNDLDMALRGCAIDETALQINFVKTAEEL-PGMQLIDLPAPTSDYSYYFPLTSAEMTKAYIEQFEELSTEIPEIETLEVLEIAEKKEKEREEQLAECLAAQEVSELEIYVKCGEQSYRLGFTAVQYEKNWKIHSLKEGLLYETDIPACVQMEEMREAKKTYVLPNQLTGANYFQAMPISEKTPQRAVEQFIYAIEKGDLTRALAFATTESSQDTSPELLKKQGEYAKELKTMLYGFLGTEDARLYGKSEEQLNKLRGKLNPEYMVYLDLIKVIPIETEE-NTETVKQYAGLYSYNGKNYLTGYTLCRQEDGWQIQSLS----APALSLESGEVMRLSKEESRKTSEQSVLKAEKNER--- |
4FDT Chain:A ((21-425)) | MQTKIQKYAGTAMPYPNRTDGMTPFYINHLGRHGARFPTSRKALDKVEKVLVSAQQENGLTSEGMALLSMIRRLSRLFDGQWGKLSKLGETEQEGIAGRMIRNYPQLFSNSAKIEAIAT------YVPRSINSM-DAFLSCMIRHNPAL-------------QVQRSEGKQYNHILRFFDLN--KSYVNYKEKGDWLPIYKAFVHKKISPVPIMKKFL--------LNPEQYLDKEAEEFVMALFSVAAILPDTSIPLNLEDLFTLDEWHRYWQTQNLRQYMSKSSAPVGKMLPVAI---------AWPLLSEFIRSAQEVISGKSDYQAN-FRFAHAETVIPFVSLMGIEKTDVQVCRPDSVSVYWKDYEISPMAANVQWLFYRDRDQRIWVKILLNEEAAALPISTACFPYYSWEKTRIFFNQRIEMAKKTLSVFN |
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General information:
TITO was launched using:
| RESULT:
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Template: 4FDT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -19735 for 3151 contacts (-6.3/contact) +
2D Compatibility (PS) -38907 + (NN) -1120 + (LL) 3048
1D Compatibility (HY) -11200 + (ID) 3000
Total energy: -70914.0 ( -22.51 by residue)
QMean score : 0.196
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