Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | SMHPQAVAAVLPAGGCGERMGVPTPKQFCPILERPLISYTLQALERVCWIKDIVVAVTGENMEVMKSIIQKYQH-KRISLVEAGVTRHRSIFNGLKALAEDQINSKLSKPEVVIIHDAVRPFVEEGVLLKVVTAAKEHGAAGAIRPLVSTVVSPSADGCLDYSLERARHRASEMPQAFLFDVIYEAYQQCSDYDLEFGTECLQLALKYCCTKAKLVEGSPDLWKVTYKRDLYAAESIIKERISQEICVVMDTEEDNKHVGHLLEEVLKSELNHVKVTSEALGHAGRHLQQIILDQCYNFVCVNVTTSDFQETQKLLSMLEESSLCILYPVVVVSVHFLDFKLVPPSQKMENLMQIREFAKEVKERNILLYGLLISYPQDDQKLQESLRQGAIIIASLIKERNSGLIGQLLIA |
| 1VPA Chain:A ((13-230)) | -----MNVAILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRV---FHEKVLGIVEGGDTRSQSVRSALEFLEKF-------SPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSDALVRVENDR-I-EYIPRKGVYRILTPQAFSYEILKKAHENGG-----EWADDTEPV-QKLGVKIALVEGDPLCFKVTFKEDLELARIIAREW--------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VPA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -161676 for 1808 contacts (-89.4/contact) +
2D Compatibility (PS) -23092 + (NN) -9194 + (LL) 16228
1D Compatibility (HY) -8000 + (ID) 3400
Total energy: -189134.0 ( -104.61 by residue)
QMean score : 0.233
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