Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDQQSTRTDITVNVDGF--WMLQALLDIRHVA---PELRCRPYVSTDSNDWLNEHPGMAV-MREQGIVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGL-----ESIHHADPA------AINAVNVPMEEMLEATKSWQESGFNVFS-GGDLRRMGISAATVAALGQALSDPAAEVAVYARQ--YRDDAKGPSASVL--SLKDGSGGRIAL-------YQQARTAGSGEAWLAICPAT----PQLVQVGVKTVLDTLPYGEWKTHSRV----------------------------------------- |
4B3X Chain:A ((1-363)) | --MAKVRIYQLAKELGMETQELLELLDQMGVAYKSHASTLEEKDAEAVRELVKEQRGLQEKLAEEERRKSLPRRPPVVVIMGHVDHGKTTLLDYLRKSRIAEKEGGGITQHVGAFEVKTPQGTVVFIDTPGH-----EAFTTIRQRGAKVADIAVIVIAADDGIMPQTEEAIAHAKAAGAKLIFAINKIDLPQADPEKVKRQLMERGFVPEEYGGDAIVIPISAKT----GQGVQDLLEMILLLAELEDYRADPNAEPRGVILESKLDKQAGIIANMLVQEGTFRVGDYVVAGEAYGRIRAMMDADGNQRKEAGPGSAVQVLGFQELPHAGDVVEWVPDLEAAKEIAEERKEERKAREEEEKARRPRTMAELLR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4B3X.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -24815 for 2062 contacts (-12.0/contact) +
2D Compatibility (PS) -29714 + (NN) -595 + (LL) 1444
1D Compatibility (HY) -3200 + (ID) 3350
Total energy: -60230.0 ( -29.21 by residue)
QMean score : 0.136
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