Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKMRVYSLLFMMLFALSIGANAQVKFFTDVNSKQIKTLQVKVAGELISEPYIALGGEEQIEINFDGLGSGYTRYAYNVVHCNADWTQSQLSPIEYMNGFQGTTIDDFANSIGTTTQYSNYRLLLPNDDVQFKVSGNYAIQVYNEDTPDQIIFTACFSVVEPVVNISASVSGNTDIDTNQSHQQVSFNINNKNFPITYPQTDLKIFVYQDNRRDNAVTDLQPMSILENQISYTYNRNLIFPAGNEYRRMEFLSNKYNGMHVENISFHNPYYNVELMT-DYRRDKGTYQYDQDQDGRFFIRCSDCNDPDTEADYYIVHFTLACDPLPDGSVYLNGELFNNVLDEKSKMGYNFETKQYEKAVLLKQGSYNYQYLFVPTGSSVGQTGPIEGNYYQTQNEYSI--YVYYRPMGARYDRLIGVTTVRNEMQVF---- |
| 3PV2 Chain:A ((6-439)) | MPSMAPVLKNIMPAIVNVAVQGYLPN-RKFESIGSGVIIDPNNGVIITNDHVI-RNASLITVT---LQDGRRLKARLI---GGD-SETDLAVLKI--------------------DAKNLKSLVIGDSDKLEV-GDFVVAIGNPFGLSQSATFGIVSALKNFIQTDAAIN-------PGNSGGALVNAKGELIGINTAILVGIGFAIPINMVKDVAQQIIKFGSIHRGLMGIFVQHL----TPELAQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTIS------LLRVGSTVKIIVERDNKPLTLSAVVTDIKSHEQKLQSNNPFLYGLALRAFEQESPPHGNVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVKSLQTIAQEKKKELLVQVLRGPGSMYLLVI |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PV2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -51679 for 3040 contacts (-17.0/contact) +
2D Compatibility (PS) -39758 + (NN) -5468 + (LL) 1256
1D Compatibility (HY) -5600 + (ID) 2350
Total energy: -103599.0 ( -34.08 by residue)
QMean score : 0.132
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