Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSLVKIMGSFLALSLIMIFSSCIVNEHVDEGN-------IKENAVRMMECIVNKDSEKLFDFYNKDM-------KDNYKDSSLDEIRQLFE--------YIDGAITSYNYEGKGGGQEAKNDGIICYYSCHPEFDFTTETGQEYTISFSYHYIWNEHPEYEGINMIQICKDGNWGEKLIIGRNYYKE----
1HKX Chain:A ((4-143))
-------------------------MTTIEDEDTKVRKQEIIKVTEQLIEAISNGDFESYTKMCDPGMTAFEPEALGNLVEGL-DFHRFYFENLWSRNSKPVHTTILNPHIHLMG------DESACIAYIRI--TQYLDAGGIPRTAQSEETRVWHRR-------------DGKW--QIVH---FHRSGAPS
General information:
TITO was launched using:
RESULT:
Template:
1HKX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58306 for 669 contacts (-87.2/contact) +
2D Compatibility (PS) -12619 + (NN) -8175 + (LL) 3644
1D Compatibility (HY) -2800 + (ID) 1050
Total energy: -79306.0 ( -118.54 by residue)
QMean score : 0.353
(partial model without unconserved sides chains):
PDB file :
Tito_1HKX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HKX-query.scw
PDB file :
Tito_Scwrl_1HKX.pdb
: