Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSAFSRFTPLIQSLPASVPFVGPEALERQHGRKIAARIGANESGFGPAPSVLLAIRQAAGD----TWKYADPENHDLKQALARHLGTSPANIAIGEGIDGLLGQIVRLVVEAGAPVVTSLGGYPTFNYHVAGHGGRLVTVPYADD-REDLEGLLAAVGRENAPLVYLANPDNPMGSWWPAERVVAFAQALPETTLLVLDEAYCETAPRDALPPIESLIDKPNVIRARTFSKAYGLAGARIGYTLSTPGTAQAFDKIRNHFGMSRIGVAAAIAALADQDYLKEVTLKIANSRQRIGRIAADSGLAPLPSATNFVAVDCGK-DASYARAIVDRLMSDHGIFIRMPGVAPLNRCIRISTAPDAEMDLLAAALPEVIRSLAAT |
| 3HDO Chain:A ((4-353)) | ---I-PLRQNIASMKGYIPGYQPP------DIASWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTGDFRIA-GFPE----RYEGKVFFLTTPNAPLGPSFPLEYIDELARRC-A-GMLVLDETYAEFAE---SNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRDHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSIGYDVIPSQGNYLFATPPDRDG---KRVY-DGLYARKVLVRHFSDPLLAHGMRISIGTREEMEQTLAALKEIGE----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3HDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -199449 for 2874 contacts (-69.4/contact) +
2D Compatibility (PS) -38200 + (NN) -29053 + (LL) 2168
1D Compatibility (HY) -18400 + (ID) 4700
Total energy: -287634.0 ( -100.08 by residue)
QMean score : 0.504
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