Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGPVAGNYVHDFTANGTSSSFYTIAGNLSTSKGTATYNGKTLTQCLKMETATSISF--TAPSAGKLTLVFA--EAAA-----TAKVDGNKVTA-----SNG--------IITVDLAQGAHTITKADA------CNLFYMEYAAHHHHHH
3WNO Chain:A ((418-510))
-------------------------------------------------TGDKVSFAINAPEAGDYSLVFRYGNNTGANSTLNLYVDGNFVQKLYFFNQSSWGTWKHDAWYQVPLTQGAHTVELRYESGNVGAVNLDSLTLG-------
General information:
TITO was launched using:
RESULT:
Template:
3WNO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32793 for 332 contacts (-98.8/contact) +
2D Compatibility (PS) -6879 + (NN) 2849 + (LL) 2280
1D Compatibility (HY) -6000 + (ID) 1200
Total energy: -41743.0 ( -125.73 by residue)
QMean score : 0.264
(partial model without unconserved sides chains):
PDB file :
Tito_3WNO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WNO-query.scw
PDB file :
Tito_Scwrl_3WNO.pdb
: