Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH
2YMU Chain:A ((16-220))
SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH
General information:
TITO was launched using:
RESULT:
Template:
2YMU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60514 for 1705 contacts (-35.5/contact) +
2D Compatibility (PS) -23110 + (NN) -25448 + (LL) 0
1D Compatibility (HY) -20400 + (ID) 10150
Total energy: -139622.0 ( -81.89 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_2YMU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YMU-query.scw
PDB file :
Tito_Scwrl_2YMU.pdb
: