Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----MSEAALTP---------AFEEPEAPRASPRSRSTLLKRLADVVC--LPSSRINAFERSMT----------------ADLLVEMLRDANVGEREKVARRLAMLNEMPGVLVRLLLR------------DELPVARALLVDSEKLSDA-DLISCLYQAT--------TEHRRLIAQRRGVSEVVADALIEV-GEPAVIETLLRNELVKLSHQGVENIVAATRDAQHLIPLLLRRAELRPSHAYVMFWWADSEARRVILQRFAVSREILQDAVGDVFALASAEGWQDPLSRKALQ---FIERRQRNRAAIAKSPFNSLDEAVAAGEGGFNREIAEEISYLSGLKPMTGAKIFTDPGGEPLAILCKATGLPRGCVRQLWRGLRRQEVDRTGATDPNLERVLTVYDA--IAVDRAQTVLRYWNWSLTSALTPALL---KAIRDGDEAAVDEYSAPQRAAMLALSRDFGR |
| 4F0L Chain:A ((11-458)) | QHFIHARQALLPDGWAENVRIGIAGGVICSIETGVLAGPDDERQSVVVAGMANLHSHAFQYGMAGLAERRGPSADSFWSWREIMYKFALTMTPEQAEAVALRLYVDMLEAGFTRVGEFHYLHHDCDGTPYANLSEMADRIAAAATTAGMGLTLLPVFYAHSGFGGAAANEGQRRFINDPERFARLIEGCRKTLEGFEGAVLGVAPHSLRAVTPDELDSVTQLLPDAPVHIHVAEQVKEVEDCIAWS-----GKRPVEWLLDHQDVTAR---------WCLIHATHMSDEETKHMAKAGAIAGLCPVTEANLGDGTFNATEFAAAGGKFGIGSDSNVLIGIGDELRQLEYSQRLYHRARNVLAA--NEGSTGRALFDGAVLGGNIAMGRPEDGLKKGASADFVSLDVERLPHAKGDVVLDGWIFAGRAHVCDVWVRGVKQVEGGRHRLRDEAERAFQKALGELLA---- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4F0L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -59483 for 3421 contacts (-17.4/contact) +
2D Compatibility (PS) -40633 + (NN) -5551 + (LL) 1716
1D Compatibility (HY) -9200 + (ID) 2750
Total energy: -115901.0 ( -33.88 by residue)
QMean score : 0.240
|
|
|