Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------MQRQPVSSSRILSIGYDPDN--------RMLEIQFREQGTYQYLGVPERAHQNFMSAVSKGRFFDGVIKGKFLCRKIG
4JM1 Chain:A ((1-84))
GADKYIDTITGFSCEKAAVTDNGFLVIAIDADSDSGYDMLASQFLEEAKKEGVSGLKGVLIVDIKN-------AKFEQGAVVGKRIGKAYK
General information:
TITO was launched using:
RESULT:
Template:
4JM1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5067 for 403 contacts (-12.6/contact) +
2D Compatibility (PS) -6916 + (NN) -3980 + (LL) 684
1D Compatibility (HY) -1600 + (ID) 650
Total energy: -17529.0 ( -43.50 by residue)
QMean score : 0.362
(partial model without unconserved sides chains):
PDB file :
Tito_4JM1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JM1-query.scw
PDB file :
Tito_Scwrl_4JM1.pdb
: