Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTSVWGKSILALVFTFMCSLAISAASPKDYLYDTK-EENGKIISKVVFL-QENG-LLNKQVR-YEFQYNENGKVSEKKAFRWDRTNDEWVPFYQITYQYDDQSGEIKTNYGMWDKKKKNFSLNVQNMIIPSTNYEEIFS-------------------------
3MSW Chain:A ((1-139))
-----------------------GTNNGKQFIHNDTME-GGKLVCREIYAMNDAASGILNPVKMYKYSYDTDQQKTVKSTYAWNIFKNTWETESRTVISRYE--TETSVEYSVWNKEKGSFDLSKKYIYITDNNNQLIAQYAYKMNSRTNQWILEKDALTPIYEN
General information:
TITO was launched using:
RESULT:
Template:
3MSW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1791 for 589 contacts (-3.0/contact) +
2D Compatibility (PS) -11739 + (NN) -1997 + (LL) 2672
1D Compatibility (HY) -4000 + (ID) 1000
Total energy: -17855.0 ( -30.31 by residue)
QMean score : 0.249
(partial model without unconserved sides chains):
PDB file :
Tito_3MSW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MSW-query.scw
PDB file :
Tito_Scwrl_3MSW.pdb
: