Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKLLNTLVCIIGLTSFSSSAKLVNAEHLDALYQKVTVANKTELGLIHIYSEFPDYRWVKDPIEGVSAIDDVARAAIFYQRQYQATGSAADLEKVKSLVEFILY-QRAD-NGYFYNFIYPDHSINKEYKTSVAEPNWWTWRALWALTQVYPTLVKTDNALAQRTRETIFATIDVIYKDFNFKQTRGEKEGVAVPEWL-------------PHTAGDQASVLLMALSDAQALEAKPEIEKMMRSLAAGIMLMQVKD---TSSPVNGAFLSWQNLWHGYGNSQ--AYALLVAGNRLGDRDMIKAAFNELDHFHPWLISNG----LLNEFTVRQQGEKVTLIEQKKFSQIAYII-RPMVFANIKAWEISRDAVYLERAVDLSLWFFKNNPAQAQMYYPVTG-IAFDGIDSATTVNKN---SGAESTIEALLTLQLIESIPDAKRMLESALEKRNIKQ |
| 3VW5 Chain:A ((38-383)) | ---------------------------------------------------------ELDKKAD-KGVILHSRILWFYSNAYMTLGGDELLDNAKHAYEFIKNNCIDYEYGGVY--WMMDFEGKPADTMKHT---YNIAFAIYALSSYYRAS--GDKEALALAYRLFEDIEKNTLY------E-YGYREAFDRQWRLVDNEALSENGLKADKTMNAILHLIEAYTELYKADGNEKVADRLKFQLGQMRDIVYTPDTNALKVFFDTAFNLVGDIHSYGHDIEATWLMDRACDVLGDEDLKKQFAEMDLKISHNIQDIALEDGALNNE-RDKNE---------IDKTRVWWVQAEAVVGFINAYQHSGDEKFLESAKSVWENIKE------YIIDKREGGEWYSEVT-FDHTPHDYKETVGPWKCPYHNGRMCMEVI------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3VW5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -135647 for 2654 contacts (-51.1/contact) +
2D Compatibility (PS) -34066 + (NN) -16927 + (LL) 8208
1D Compatibility (HY) -1600 + (ID) 2200
Total energy: -182232.0 ( -68.66 by residue)
QMean score : 0.327
|
|
|