Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVLLLVFLSLTWLSASAQALVPITWTAYGLTFEAPKGILVEE------DTEETFLLNNSRFYITIQSLDSDGMTKSDLKSVLKDYANDDGVKDQSAVQEFEL---PQFFGTYLKGSCETDH--------CLYACLMTKAAGSGFYISIIY------------------SKENENIAEKILKSFTMEE-----
1EQ6 Chain:A ((30-218))
-----SMNNKEVELYGGAITTVVPPGFIDASTLREVPDTQEVYVNSRRDEEEFEDGLATNESIIVDLLETVDKSDLKEAWQFHVEDLTELNGTTKWEALQEDTVQQGTKFTGLVMEVANKWGKPDLAQTVVIGVALIRLTQFDTDVVISINVPLTKEEASQASNKELPARCHAVYQLLQEMVRKFHVVDTSLFA
General information:
TITO was launched using:
RESULT:
Template:
1EQ6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83860 for 1091 contacts (-76.9/contact) +
2D Compatibility (PS) -15853 + (NN) -1761 + (LL) 704
1D Compatibility (HY) -5200 + (ID) 1050
Total energy: -107020.0 ( -98.09 by residue)
QMean score : 0.286
(partial model without unconserved sides chains):
PDB file :
Tito_1EQ6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EQ6-query.scw
PDB file :
Tito_Scwrl_1EQ6.pdb
: