Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | AMIPLFKVAVSPTALDRVAEVFASGYLGQGPRVAEFESALAARLGNPRVVSVHSGTSGLCLALRLLDAPEERDEVLSTPLTFEATNWAILADGRRITWVDVDPATLTMDLDDLERKISPATRAIIVVHWTGYPVDLDRLAGILDRAEREHGFRPAVIEDCAHAWGASYRGVPLGSHGNMCVFSFQALH-LTCGDGGLLTLPGDELHERAMLRRFYGIDRTADRLRGAYDVAEWGLKWHMTDLNAAIGLANLETVDEQLRLHRENAAFYDKELTGVPGLEL---LQRSPDREGSFYVYDVKVD------DRPAFHRKMEAAGIMAGLVSRRNDEHSCV---AHLRTSLPGLDSVYDRMVSLPVGWWLTEQDREHVVATIRSGW |
| 4LC3 Chain:A ((15-385)) | PFLPFTRPEIDEETIQGVVEVLRSGWITTGPQCQKFEAALSEYCGGRPVRVFNSGTCTLEIGLRIAGV-GPGDEVITTPASWVSTSNVIIETGATPVFADIDPVTRNIDLDKLEQAITPRTKAIIPVFLSGLPVDMDRLYAIARA----HKL--RVIEDAAQAFGSTWHGKRIGAIGDLVSFSFHANKNLTTIEGGALVLNNEDEAVLAQKYRLQGITRTGF---DGMDCDVLGGKYNLTDVAARVGLGQLPHLERFTAQRRALARAYFAAFDGGAAAKLGVGLPVAEFENGNWHMFLVTLPLERLTITRAEFMAQMKERGIGTGIHYPAIHLFTLYRARGFKEGMFPHAERYGASTVTLPLFTQMTEGDVRRVVDAVNQI- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4LC3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -226873 for 3117 contacts (-72.8/contact) +
2D Compatibility (PS) -39213 + (NN) -17822 + (LL) 804
1D Compatibility (HY) -20800 + (ID) 5550
Total energy: -309454.0 ( -99.28 by residue)
QMean score : 0.479
|
|
|