Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEPIILRYFPVLGRAQALRHALADAELAFRDLRIPLEQWSQHKDSDAGGPYGSLPTLRWHGVEVAETIAIASFLARSLGHYEGRDNGEIARLEAVVSLCYTEVSLQIAQLLWLDLFNPGVDLAAAVPLQFGRLVARLTRLEAHTPEAGWFGGERPVMADYFAAEAIEALRYLLGREHDDALRTRLPHLCALARRMAQRPALAQAWSTRPQTFTAHPDEAAMLERLRALPLAATIGASME
1LBK Chain:A ((2-208))
---PYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVETW-QEGSLKASCLYGQLPKFQDGDLTLYQSNTILRHLGRTLGLY-GKDQQEAALVD-MVNDGVEDLRCKYISLIYTNYEAGKDDYVKALP---GQLKPFETLLSQNQGGKTFIVGDQISFADYNLLDLL-LIHEVLAPGCLDA----FPLLSAYVGRLSARPKL-KAFLASPEYVNLPMDEKSL------------------
General information:
TITO was launched using:
RESULT:
Template:
1LBK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103449 for 1586 contacts (-65.2/contact) +
2D Compatibility (PS) -23167 + (NN) -20445 + (LL) 3368
1D Compatibility (HY) -12800 + (ID) 2900
Total energy: -159393.0 ( -100.50 by residue)
QMean score : 0.433
(partial model without unconserved sides chains):
PDB file :
Tito_1LBK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LBK-query.scw
PDB file :
Tito_Scwrl_1LBK.pdb
: