Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | SNAMPFLPDPGEPSPLKVVIAGAGYVGTCLAVTLAGRGAEVVAVDSDPGTVADLRAGRCRLPEPGLAGAVRDLAATGRLTASTSYDP-VGAADVVIVTVGTPTDAGHEMVTDQLVAACEQIAPRLRAGQLVILKSTVSPGTTRTLVAPLLES----GGLVHERDFGLAFCPERLAEGVALAQVRTLPVVVGGC-----GPRSAAAAERFW-------RSALGVDVRQVPSAESAEVVKLATNWWIDANVAIANELARYCAVLGVDVLDVIGAANTLPKGSSMVNLLLPGVGVGGSCLTKDPWMAWRDGRDRGVPLRTVETARAVNDDMPRHTAAVIADELV-KLGRDRNDTTIAVLGAAFKNDTGDVRNTPVRGVVAALRDSGFRVRIFDPLA-DPAEIVARFGTAPAASLDEAVS----------GAGCLAFLAGHRQFHELDFGALAERVDEPCLVFDGRMHLPPARIRELHRFGFAYRGIGR |
| 2Y0E Chain:A ((9-459)) | ---------------MNLTIIGSGYVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEELAKRGG---DQMFSVVSNPEFLKEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVR------SAEFTKYAANAMLATRISFMNELANLADRFGADIEAVRRGIGSDPRIG--YHFLYAGCGYGGSCFPKDVEALIRTADEHGQSLQILKAVSSVNATQKR----VLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEAQAARDADALVIVTEWKIFKSPDFVALGRLWKTP-VIFDGRNLYEPETMSEQ---GIEYHPIGR |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y0E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -278624 for 3614 contacts (-77.1/contact) +
2D Compatibility (PS) -45548 + (NN) -13881 + (LL) 1380
1D Compatibility (HY) -27200 + (ID) 6900
Total energy: -370773.0 ( -102.59 by residue)
QMean score : 0.488
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