Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKYLTIVIALVTLQSAFSQVISETFSSGRLNRKQKIGIYKPEKYTD-RQAYPLIVVLNAETLMEPVVSMVRYYEQFG---EMPKCIVVGVYE-PKQEDVTVVEEVG-----------RPINESARFFEFVSAELVPYIQGKYPIADLKGVIASEEAGFLANYYMLAEKKPTFNMIVSLNPVALPRMGEEFSH---ALAAGVPNRLFYYMATAD--VENKVVYDKAI-----QFERAMRSAPVHESVEYHFVDFKGSSVNAAKLQGIAQALDMCFDIYKPIGGKEFKTQMETLETGIYEYLENKYNTIYKQLGVKKVPILNDVMATYTAINSSQDWESLKKLAKYVESNGYLKTAMPNFFLAEYYEKIGDDKKALKTYQKAYTEPNIDFITGDLINERITHLQATKRKSKHTKVIEPIEPTEEVAPAQEEQNPTDESNQN |
| 3GFF Chain:A ((11-329)) | -------------------EYQSKRLESRLLKETREYVIALPEGYAQSLEAYPVVYLLDGEDQFDHMASLLQFLSQ-GTMPQIPKVIIVGIHNTNRMRDYTPTHTLVLPSGNKGNPQYQHTGGAGRFLDFIEKELAPSIESQLRTNGINVLVGHSFGGLVA-MEALRTDRPLFSAYLALDTSLWFDSPHYLTLLEERVVKGDFKQKQLFMAIANNPLSPGFGVSSYHKDLNLAFADKLTKL-APKGLGFMAKYYPEETHQSVSHIGLYDGIRHLFKDFAIDIY---F---------SKQQVIDQYGVLSERFGHKVTPSQQYLEQLIQYSDRQQLTERKQMLEG-L-RQHFA---------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GFF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -152308 for 2331 contacts (-65.3/contact) +
2D Compatibility (PS) -30959 + (NN) -12460 + (LL) 8976
1D Compatibility (HY) -12000 + (ID) 2450
Total energy: -201201.0 ( -86.32 by residue)
QMean score : 0.345
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