Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVSSNGGAIKAVIYDCDGVMFDSFEANLAFYQRIMEMMGRPRLSRDNEEQMRILHTYANREVLAHFFPSPGDWEEAVRCAGAIDYRELVPLMIMEEGFREALDTLKG-RVGLGVCTNRSTS-MDMVLRLFSLDSYFSIVMTASRVTNPKPHPEPLLKVLEHFGIGPREALFVGDSEVDRLSAEAAGVPFVAYKAPL------PAAYRMEHHREIIDLLG
2NYV Chain:A ((2-208))
--------SLRVILFDLDGTLIDSAKDIALALEKTLKELGLEEYYP---DNVTKYIGGGVRALLEKVLK-DKFREEYVEVFRKHYLENPVVYTKPYPEIPYTLEALKSKGFKLAVVSNKLEELSKKILDILNLSGYFDLIVGGDTFGEKKPSPTPVLKTLEILGEEPEKALIVGDTDADIEAGKRAGTKTALALWGYVKLNSQIPDFTLSRPSDLVKLM-
General information:
TITO was launched using:
RESULT:
Template:
2NYV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -170980 for 1651 contacts (-103.6/contact) +
2D Compatibility (PS) -21586 + (NN) -15602 + (LL) 160
1D Compatibility (HY) -11600 + (ID) 2050
Total energy: -221658.0 ( -134.26 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_2NYV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NYV-query.scw
PDB file :
Tito_Scwrl_2NYV.pdb
: