Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--GHMKFTDQQIGVLAGLAISPEWLKQNIAANQLVYGIVKPSDTVPAGVDD--------YSYLVAADDQDG--TIIFFKAEGQTVIIKYTSQRNTKLKAKALTLSQL----KKEFYQTRSQKREVDD--YVAGLRTE
1WK0 Chain:A ((1-137))
GSSGSSGDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIPNPPRISGPSSG
General information:
TITO was launched using:
RESULT:
Template:
1WK0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19657 for 694 contacts (-28.3/contact) +
2D Compatibility (PS) -12403 + (NN) 1705 + (LL) 0
1D Compatibility (HY) -2000 + (ID) 1000
Total energy: -33355.0 ( -48.06 by residue)
QMean score : 0.302
(partial model without unconserved sides chains):
PDB file :
Tito_1WK0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WK0-query.scw
PDB file :
Tito_Scwrl_1WK0.pdb
: