Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GFDPEKAQCCLVENGQILTHGSGGKGYGL--ASTGVTSGCYQWKFYI-VKENRGNEGTCVGVSRWPVHDFNHRTTSDMWLY--RAYSGNLYHNGEQTLTLSSFTQGDFITCVLDMEARTIS------FGKNGEEPKLAFEDVDAAELYPCVMFYSSNPGEKVKICDMQMR
3TOJ Chain:A ((309-477))
----------------------GEKGYSMVRASHGVRKGA--WYFEITVDEMPPDTAARLGWSQ-PLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPED---GSSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKS--------------
General information:
TITO was launched using:
RESULT:
Template:
3TOJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53086 for 796 contacts (-66.7/contact) +
2D Compatibility (PS) -12810 + (NN) -7659 + (LL) 2352
1D Compatibility (HY) -7600 + (ID) 1750
Total energy: -80553.0 ( -101.20 by residue)
QMean score : 0.288
(partial model without unconserved sides chains):
PDB file :
Tito_3TOJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TOJ-query.scw
PDB file :
Tito_Scwrl_3TOJ.pdb
: