Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GHMGSP---VSYYFSYADGGTSHTEYPDDSSAGSFILDITSYKKTGNSTKALSWNASGDSWIHVNGSSVSY-----DENPAKERRTGLVTLKQDESGKTLSLKIVQPGKTSID
1IM3 Chain:D ((1-95))
-----PWFQIEDNRCYIDNGKLFARGSIVGNMSRFVFDPKAD--YGGVGENLYVHA--DDVEFVPGESLKWNVRNLDVMPIFE----TLALRLVLQGDVIWLRCVPEL-----
General information:
TITO was launched using:
RESULT:
Template:
1IM3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1341 for 551 contacts (2.4/contact) +
2D Compatibility (PS) -9791 + (NN) -6478 + (LL) 104
1D Compatibility (HY) -3600 + (ID) 1000
Total energy: -19424.0 ( -35.25 by residue)
QMean score : 0.243
(partial model without unconserved sides chains):
PDB file :
Tito_1IM3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IM3-query.scw
PDB file :
Tito_Scwrl_1IM3.pdb
: