Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAMHFIFSDTAVLLFDFWSVHSPAGMALSVLVLLLLAVLYEGIKVGKAKLLNQVLVNLP--TSISQQTIAETDGDSAGSDSFPVGRTHHRWYLCHFGQSLIHVIQVVIGYFIMLAVMSYNTWIFLGVVLGSAVGYYLAYPLLSTA
4O9R Chain:A ((169-239))
---------------------------------------------GKTSYFHLLTWSLPFVLTVAILAVAQVDGDSVSGICF-VGYKNYR-YRAGFVLAPIGLVLIVGGYFLIRGVMTLFSIKSNHADLEDNWETLNDNLKVIEK
General information:
TITO was launched using:
RESULT:
Template:
4O9R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15664 for 335 contacts (-46.8/contact) +
2D Compatibility (PS) -7217 + (NN) -1167 + (LL) 4840
1D Compatibility (HY) -6400 + (ID) 1100
Total energy: -26708.0 ( -79.73 by residue)
QMean score : -0.025
(partial model without unconserved sides chains):
PDB file :
Tito_4O9R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4O9R-query.scw
PDB file :
Tito_Scwrl_4O9R.pdb
: