Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence----MNDTEKPADTPSEEEDFGDPRTYDPDFKGPVANRSCTDVLCCMIFLLCIIGYIVLGLVAWVHGDPRRAAYPTDSQGHFCGQKGTPNENKTILFYFNLLRCTSPSVLLNLQCPTTQICV---SKCPEKFLTYVEMQLLYTKDKSYWEDYRQFCKTTAKPVKSLTQLLLDDDCPTAIFPSKPFLQRCF-------PDFSTKNGTLTIGSKMMFQDGNGGTRSVVELGIAANGINKLLDAKSLGLKVFEDYARTWYWILIGLTIAMVLSWIFLI--LLRFIAGCLFWVFMIGVIGIIGYGIWHCYQQYTNLQERPSSVLTIYDIGI----QTNISMYFELQQTWFTFMIILCI-------IEVIVILMLIFLRN----------------------RIRVA--------------------IILLKEGSKAIGYVPSTLVYPALTFILLSICICYWVVTAVFLATS----------------GVPVYKVIAPGGHCIHENQTC--------DPEIFNTTEIAKACPG---------------------ALCNFAFYGGKSLYHQYI----PTFHVYNLFVFLWLINFVIALGQCALAGAFATYYWAMKKPDDIPRYPLFTAFGRAIRY---------------HT--GSLAFGSLIIALIQMF----KIVLEYLDHRLKRTQNTLSKFLQCCLRCCFW------CLENAIKFLNR---NAYIMIAIYGRNFCRSAKDAFNLLMRNVLKVAVTDEVTYFVLFLGKLLVAGSI---------GVLAFLFFTQRLPVIAQGPASLNYYWVPLL-----TVIFGSYL-------IAHGFFSVYAMCVETIFICFLEDLERND------GSTARPYFVTPNLHGILIKKQLVPQKQKE--------
4PKF Chain:A ((8-864))KVLEYKGKKLNFTPEDPAEETIPADELHEHLQKPSTARTKRLKERCRWKHASAGEFIEKSVTAGI----ERMRYLTEAHKAS---EGKPEAIRRALGLANVLNKST------LVLQEDEFIVGYHAEDPNMFPLYPELSHMAVQDYLRSDYSPQPADEAAAINEYWKPHSLQSKCQPYFDPAD--LGRMYQVSSMEAPSFASGYNSIVPPYETVLEDGLLARIKLAEKHIAEAQADMSTFPWN-GTKGLDNIAKIDNWKAMVIACKAVISWARRQGRLCKIVAEN-----------------------FETDPKRQAELLEIADICQRIPAEPCKGLKDAMQAKFFTFLICHAIERYASGYAQKEDTLLWPYYKASVVDKKFQPMSHMDAVELVEMERLKISEHGAGKSRAYREIFPGSNDLFILTVGGTNAKGEDACNDMTDAILEAAKRIRTAEPSIVFRYSKKNREKTLRWVFECIRDGLGYPSIKHDEIGTEQMKEYAKFSLNGNGATDEEAHNWVNVLCMSPGIHGRRKTQKTRSEGGGSIFPAKLLEISLNDGYDWSYADMQLGPKTGDLSSLKSFEDVWEAFRKQYQYAINLCISTKDVSRYFEQRFLQMPFVSAIDDGCMELGMDACALSEQPNGWHNPITTIVAANSLVAIKKLVFEEKKYTLEQLSQALKANWEGFEEMRVDFKRAPKWGNDDDYADGIITRFYEEIIGGEMRKITNYSGGPVMPTGQAVGLYMEVGSRTGPTPDGR----FGGEAADDGGISPYMGTDKKGPTAVLRSVSKVQKNQKGNLLNQRLSVPIMRSKHGFEIWNSYIKTWHDLNIDHVQFNVVS--TDEMRAAQREPEKHHDLIVRVSGYSARFVDIPTYGQNTIIARQEQDFSASDLEFLNVEI


General information:
TITO was launched using:
RESULT:

Template: 4PKF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -463285 for 5352 contacts (-86.6/contact) +
2D Compatibility (PS) -69093 + (NN) -3126 + (LL) 3180
1D Compatibility (HY) 3600 + (ID) 6250
Total energy: -534974.0 ( -99.96 by residue)
QMean score : 0.170

(partial model without unconserved sides chains):
PDB file : Tito_4PKF.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4PKF-query.scw
PDB file : Tito_Scwrl_4PKF.pdb: