Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPSRLQLGLRAAYSGISSVAGFSIFL-VWTVVYRQPGTAAMGGLAGVLALWVLVTHVMYMQDYWRTWLKGLRGFFFVGVLFSAVSIAAFCTFLVLAITRHQSLTDPTSYYLSSVWSFISFKWAFLLSLYAHRYRADFADISILSDF
3HD6 Chain:A ((280-325))
-------GKLDMVHIQNATLAGGVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPGIIGGIVGAVTAASDWTARTQGKFQIYGLLVTLAMALMGGIIVGLILRLPFWGQPSDENCFEDAVYW
General information:
TITO was launched using:
RESULT:
Template:
3HD6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19368 for 231 contacts (-83.8/contact) +
2D Compatibility (PS) -4207 + (NN) 5230 + (LL) 580
1D Compatibility (HY) -400 + (ID) 300
Total energy: -18465.0 ( -79.94 by residue)
QMean score : 0.111
(partial model without unconserved sides chains):
PDB file :
Tito_3HD6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HD6-query.scw
PDB file :
Tito_Scwrl_3HD6.pdb
: