Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAGRRLNLRWALSVLCVLLMAETVSGTRGSSTGAHISPQFPASGVNQTPVVDCRKVCGLNVSDRCDFIRTNPDCHSDGGYLDYLEGIFCHFPPSLLPLAVTLYVSWLLYLFLILGVTAAKFFCPNLSAISTTLKLSHNVAGVTFLAFGNGAPDIFSALVAF-SDPHTAGLALGALFGAGVLVTTVVAGGITILHPFMAASRPFFRDIVFYMVAVFLTFLMLFRGRVTLAWALGYLGLYVFYVVTVILCTWIYQRQRRGSLFCPMPVTPEILSDSEEDRVSSNTNSYDYGDEYRPLFFYQETTAQILVRALNPLDYMKWRRKSAYWKALKVFKLPVEFLLLLTVPVVDPDKDDQNWKRPLNCLHLVISPLVVVLTLQSGTYGVYEIGGLVPVWVVVVIAGTALASVTFFATSDSQPPRLHWLFAFLGFLTSALWINAAATEVVNILRSLGVVFRLSNTVLGLTLLAWGNSIGDAFSDFTLARQGYPRMAFSACFGGIIFNILVGVGLGCLLQISRSHTEVKLEPDGLLVWVLAGALGLSLVFSLVSVPLQCFQLSRVYGFCLLLFYLNFLVVALLTEFGVIHLKSM |
3V5U Chain:A ((16-304)) | ------------------------------------------------------------------------------------------------------------------LYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHA--PGISIGNAIGSCICNIGLVLGLSAIISPIIVDKN-LQKNILVYLLFVIFA-AVIGIDGFSWIDGVVLLILFIIYLRWTVKNGS------A----------------------------------------------------------------------------------------------KNNP---------------------------------------------------------------SVVFSLVLLIIGLIGVLVGAELFVDGAKKIALALDISDKVIGFTLVAFGTSLPELMVSLAAAKRNLGGMVLGNVIGSNIADIGGALAVGSLFMHLPA--------ENV--QMA-VLVIMSLLL---YLFAKYSKIGRWQGILFLALYIIAIASLRMGGG-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3V5U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -321890 for 2552 contacts (-126.1/contact) +
2D Compatibility (PS) -28057 + (NN) -3766 + (LL) 20812
1D Compatibility (HY) -26000 + (ID) 2450
Total energy: -361351.0 ( -141.60 by residue)
QMean score : 0.289
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