Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | METVPPAVDLVLGASACCLACVFTNPLEVVKTRLQLQGELQARGTYPRPYHGFIASVAAVARADGLWGLQKGLAAGLLYQGLMNGVRF-YCYSLACQAGLTQQPG------GTVVAGAVAGALGAFVGSPAYLIKTQLQAQTVAAVAVG-HQHNHQTVLGALETIWRQQGLLGLWQGVGGAVPRVMVGSAAQLATFASAKAWVQKQQWLPEDSWLVALAGGMISSIAVVVVMTPFDVVSTRLYNQPVDTAGRGQLYGGLTDCMVKIWRQEGPLALYKGLGPAYLR-LGPHTILSMLFWDELRKLAGRAQHKGT |
| 4C9J Chain:A ((28-313)) | ------AINFLMGGVSAAIAKTAASPIERVKILIQNQDEMIKQGTLDKKYSGIVDCFKRTAKQEGLISFWRGNTANVIRYFPTQALNFAFKDKIKLMFGFKKEEGYGKWFAGNLASGGAAGALSLLFVYSLDFARTRLAADAKS-----ARQFNGLT--DVYKKTLKSDGIAGLYRGFMPSVVGIVVYRGLYFGMFDSLK-----------------FLLGWVVTTGASTCSYPLDTVRRRM----MMTSGQAVKYNGAIDCLKKIVASEGVGSLFKGCGANILRSVAGAGVISM--YDQLQMILFGKKF--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C9J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -85443 for 1946 contacts (-43.9/contact) +
2D Compatibility (PS) -26588 + (NN) -3058 + (LL) 3604
1D Compatibility (HY) -14400 + (ID) 3400
Total energy: -129285.0 ( -66.44 by residue)
QMean score : 0.214
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