Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDFLMSGLAACGACVFTNPLEVVKTRMQLQGELQAPGTYQRHYRNVFHAFITIGKVDGLAALQKGLAPALLYQF--------LMNGIRLGTYGLAEAGGYLHTAEGTHSPARSAAAGAMAGVMGAYLGSPIYMVKTHLQAQAASEIAVGHQYKHQGMFQALTEIGQK----HGLVGLWRGALGGLPRVIVGSSTQLCTFSSTKDLLSQWEIFPPQSWKLALVAAMMSGIAVVLAMA----PFDVACTRLYNQPTDAQGKGLMYRGILDALLQTARTEGIFGMYKGIGASYFR-LGPHTILSLFFWDQLRSLYYTDTK |
| 4C9J Chain:A ((29-317)) | INFLMGGVSAAIAKTAASPIERVKILIQNQDEMIKQGTLDKKYSGIVDCFKRTAKQEGLISFWRGNTANVIRYFPTQALNFAFKDKIKL-MFGFKKEEGYGKWFAG------NLASGGAAGALSLLFVYSLDFARTRLAADAKS-----AR-----QFNGLTDVYKKTLKSDGIAGLYRGFMPSVVGIVVYRGLYFGMFDSLK---------------------FLLGWVVTTGASTCSYPLDTVRRRMMM----TSGQAVKYNGAIDCLKKIVASEGVGSLFKGCGANILRSVAGAGVISM--YDQLQMILFGKKF |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C9J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -91043 for 1845 contacts (-49.3/contact) +
2D Compatibility (PS) -25893 + (NN) 1665 + (LL) 2812
1D Compatibility (HY) -16400 + (ID) 3550
Total energy: -132409.0 ( -71.77 by residue)
QMean score : 0.173
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