Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDPETRGQEIIKVTPLQQMLASCTGAILTSVIVTPLDVVKIRLQAQNNPLPKGKCFVYSNGLMDHLCVCEEGGNKLWYKKPGNFQGTLDAFFKIIRNEGIKSLWSGLPPTLVMAVPATVIYFTCYDQLSALLRSKLGENETCIPIVAGIVARFGAVTVIS-----PLELIRTKM----QSKKFSYVELHRFVS---KKVSEDGWISLWRGWAPTVLRDVPFSAMYWYNYEILKKWLCEKSGLYEPTFMINFTSGALSGSFAAVATLPFDVVKTQKQTQLWTYESHKISMPLHMSTWIIMKNIVAKNGFSGLFSGLIPRLIKIAPACAIMISTYE------FGKAFFQKQNVRRQQY |
| 4C9H Chain:A ((24-317)) | ---------------LIDFLMGGVSAAVAKTAASPIERVKLLIQNQDEMLKQGT--------LDR-----------------KYAGILDCFKRTATQEGVISFWRGNTANVIRYFPTQALNFAFKDKIKAMFGFK--KEEGYAKWFAGNLASGGAAGALSLLFVYSLDYARTRLAADS------ARQFNGLIDVYKKTLKSDGVAGLYRGFLPSVVGIVVYRGLYFGMYDSLK--------------LASFLLGWVVTTGASTCSYPLDTVR--RRMMMTSGQAVK-----YDGAFDCLRKIVAAEGVGSLFKGCGANILR-GVAGAGVISMYDQLQMILFGKKFK---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C9H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -65240 for 1838 contacts (-35.5/contact) +
2D Compatibility (PS) -26108 + (NN) 6270 + (LL) 4760
1D Compatibility (HY) -14800 + (ID) 3550
Total energy: -98668.0 ( -53.68 by residue)
QMean score : 0.044
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