Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MATWRRDGRLTGGQRLLCAGLAGTLSLSLTAPLELATVLAQ-------VGVVRGHARGPWATGHRVWRAEGLRALWKGNAVACLRLFPCSAVQLAAYRKFVVLF--TDDLGHISQW--SSIMAGSLAGMVSTIVTYPTDLIKTRLIMQNILEPS---YRGLLHAFSTIYQQEGFLALYRGVSLTVVGALPFSAGSLLVYMNLEKIWNGPRDQFSLPQNFANVCLAAAVT---QTLSFPFETVKRKMQAQSPYLPHSGGVDVHFSGAVDCFRQIVKAQGVLGLWNGLTANLLKIVPYFGIMFSTFEFCKRICLYQNGYILSPLSYKLTPGVDQSLQPQELRELKKFFKTRKPKPKKPTL |
4C9J Chain:A ((30-306)) | --------------NFLMGGVSAAIAKTAASPIERVKILIQNQDEMIKQGTLDKKYSGIVDCFKRTAKQEGLISFWRGNTANVIRYFPTQALNFAFKDKIKLMFGFKKEEGY-GKWFAGNLASGGAAGALSLLFVYSLDFARTRLAADAKS---ARQFNGLTDVYKKTLKSDGIAGLYRGFMPSVVGIVVYRGLYFGMFDSLK------------------FLLGWVVTTGASTCSYPLDTVRRRMMMTS-------GQAVKYNGAIDCLKKIVASEGVGSLFKGCGANILRSVAGAGVISMYDQLQMILFGKKF------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C9J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -96452 for 1736 contacts (-55.6/contact) +
2D Compatibility (PS) -24628 + (NN) 1039 + (LL) 4012
1D Compatibility (HY) -16400 + (ID) 3600
Total energy: -136029.0 ( -78.36 by residue)
QMean score : 0.128
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