Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAAVGAGGSTAAPGPGAVSAGALEPGTASAAHRRLKYISLAVLVVQNASLILSIRYARTLPGDRFFATTAVVMAEVLKGLTCLLLLFAQKRGNVKHLVLFLHEAVLVQYVDTLKLAVPSLIYTLQNNLQYVAISNLPAATFQVTYQLKILTTALFSVLMLNRSLSRLQWASLLLLFTGVAIVQAQQAGGGGPRPLDQNPGAGLAAVVASCLSSGFAGVYFEKILKGSSG--SVWLRNLQLGLFGTALGLV--GLWWAEGT-AVATRGFFFGYTPAVWG-VVLNQAFGGLLVAVVVKYADNILKGFATSLSIVLSTVASIRLFGFHVDPLFALGAGLVIGAVYLYSLPRGAAKAIASASASASGPCVHQQPPGQPPPPQLSSHRGDLITEPFLPKLLTKVKGS |
| 3M6E Chain:A ((41-157)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FAGIFYNSTTLGVCAVLGTAASTLTAQLLGVDKPLVRAGLFGANGTLAGIALPFFFNYEPAMLGYVALNGAFTTIIMASLLNF---LGKWGVPALTAPFVLATWLLMFGVYKLSLFHPGALIAPALPSVADMGTVTGRTFMEGLFKGVGEVMFQDNIVTGVIFVVAILVNSRISALFAVIGSLVGLCT |
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General information:
TITO was launched using:
| RESULT:
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Template: 3M6E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -61279 for 807 contacts (-75.9/contact) +
2D Compatibility (PS) -11053 + (NN) -2571 + (LL) 17216
1D Compatibility (HY) -6800 + (ID) 1800
Total energy: -66287.0 ( -82.14 by residue)
QMean score : 0.064
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