Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MPGCPCPGCGMAGPRLLFLTALALELLERAGGSQPALRSRGTATACRLDNKESESWGALLSGERLDTWICSLL-GSLMVGLSGVFPLLVIPLEMG-TMLRSEAGAWRLKQLLSFALGGLLGNVFLHLLP-EAWAYTCSASPGGEGQSLQQQQQLGLWVIAGILTFLALEKMFLDSKEEGT-SQA-PNKDPTA-AAAALNGGHCLAQPAAEPGLGAVVRSIKVSGYLNLLANTIDNFTHGLAVAASFLVSKKIGLLTTMAILLHEIPHEVG-DFAILLRAGFDRWSAAKLQLSTALGGLLGAGFAICTQSPKGVVGCSPAAEETAAWVLPFTSGG---FLYIALVN-VLPDLLEEE-DPWRSLQ-QLLLLCAGIVVMVLFSLF-VD- |
| 3NUH Chain:B ((402-784)) | GLPG-KLADCQERDPAL---SELYLVEGDSAGGSAKQGRNRKNQAILPLKGLSSQEVATLI--TALGRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIAL----DGATLHTNAS------APALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSD--------EQTVTRWVNALVSELNDKEQH-GSQWKFDVHTNALFEPIVRVRTHGVDTDYPLDHEFITGGEYRRI----CTLGEKLRGLLEEDAFIERGERRQPV---ASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDP-ESRRMLRVTVKDAIAADQLFTTLMGDA |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NUH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -79533 for 2266 contacts (-35.1/contact) +
2D Compatibility (PS) -33220 + (NN) 4052 + (LL) 1392
1D Compatibility (HY) 16000 + (ID) 1600
Total energy: -92909.0 ( -41.00 by residue)
QMean score : -0.002
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