| Genome, Protein Family, DBase |
Num | 3D Models | Genome, Protein Family, DBase Description | Related Site | Nb of Seq. | Date |
| 1 | APH2 (@tome v3) | focused screen of APH enzymes from selected human pathogens | - | 41 | 2019 Jan |
| 2 | APH_2019 (@tome v3) | Aminoglycoside Phosphotransferase | - | 351 | 2019 Jan |
| 3 | BDB_PF00105_NR (@tome v2.2) | Nuclear Receptors of Binding DataDase | BindingDB | 81 | 2016 Mar |
| 4 | BINDING_DB (@tome v2.2) | Part of Binding DataDase | BindingDB | 1030 | 2014 Jul |
| 5 | CASP10 (@tome v2.0) | Protein Structure Prediction CASP | CASP | 114 | 2012 May |
| 6 | CASP11 (@tome v2.2) | Protein Structure Prediction CASP | CASP | 97 | 2014 Apr |
| 7 | CASP12  (@tome v2.3) | Protein Structure Prediction CASP | CASP | 90 | 2016 May |
| 8 | CHLAMYDOMONAS (@tome v2.3) | Nitrosylome of Chlamydomonas | - | 1417 | 2017 Apr |
| 9 | CSAR_2014 (@tome v2.2) | Community Structure-Activity Resource | - | 3 | 2014 Jun |
| 10 | GLUT_HUMAN (@tome v2.3) | Glucose transporter | - | 12 | 2018 Mar |
| 11 | GPCR_HUMAN (@tome v2.2) | G protein-coupled receptors | - | 826 | 2016 Jan |
| 12 | HDAC_HUMAN (@tome v2.3) | Histone DeACetylases | - | 11 | 2017 Jun |
| 13 | HDAC_LEIIN (@tome v2.3) | Histone DeACetylases | - | 4 | 2017 Sep |
| 14 | HDAC_TOXGG (@tome v2.3) | Histone DeACetylases | - | 5 | 2017 Jun |
| 15 | HDAC_TOXGM (@tome v2.3) | Histone DeACetylases | - | 5 | 2017 Jun |
| 16 | hSH2_Pfam (@tome v2.3) | Human SH2 Domain | - | 145 | 2017 May |
| 17 | KINOME_HUMAN (@tome v2.2) | Protein Kinase | - | 484 | 2015 Oct |
| 18 | KINOME_K2017 (@tome v2.3) | KINOME DB study Klaeger 2017 | - | 258 | 2018 Aug |
| 19 | LI_PKS (@tome v2.3) | Protein Kinase | - | 208 | 2018 Mar |
| 20 | LIPK_CYS (@tome v2.3) | Leishmania kinases with cystein in binding site | - | 52 | 2018 Jul |
| 21 | LTP_PLANTS (@tome v2.2) | Lipid Transfer Protein | - | 796 | 2014 May |
| 22 | MAGMAX (@tome v3) | Magnaporthe max effectors - representative sequences at 50% sequence identity | - | 105 | 2019 Mar |
| 23 | MAX_DIVERS (@tome v2.3) | Magnaporthe Avirulence TOXb 2 | - | 140 | 2018 Mar |
| 24 | MAX_EFFECT (@tome v2.3) | Magnaporthe Avirulence TOXb | - | 32 | 2018 Mar |
| 25 | MS2MDL_PROTEASOME (@tome v3) | Human Proteases | - | 192 | 2020 Jan |
| 26 | MS2MODEL_SGK223 (@tome v2.3) | Interactome SGK223 | - | 61 | 2018 Jul |
| 27 | MS2MODELS_DeltaP73 (@tome v2.3) | Partenaires de la protéine P73 mutée | - | 17 | 2018 Oct |
| 28 | MS2MODELS_P73 (@tome v2.3) | Partenaires de la protéine P73 sauvage | - | 32 | 2018 Oct |
| 29 | MS2MODELS_THEMIS1 (@tome v2.3) | themis1 | - | 11 | 2018 Jul |
| 30 | NAV_THE_KINOME (@tome v2.2) | Protein Kinase (Navigating the Kinome) | | 171 | 2013 Jul |
| 31 | NDT (@tome v2.2) | Nucleotidyltransferase | - | 9 | 2012 Dec |
| 32 | NR_DANRE_I50 (@tome v2.2) | Nuclear Receptor (models > 50% sequence identity) | - | 11 | 2016 Jan |
| 33 | NR_HUMAN_I30 (@tome v2.2) | Nuclear Receptor (models > 30% sequence identity) | - | 48 | 2016 Jan |
| 34 | NR_HUMAN_I50 (@tome v2.2) | Nuclear Receptor (models > 50% sequence identity) | - | 30 | 2016 Nov |
| 35 | NR_HUMAN_I60_2019M4 (@tome v3) | Human family of nuclear receptors | - | 48 | 2019 Apr |
| 36 | NR_HUMAN_I60_2019M8 (@tome v3) | Human family of nuclear receptors | - | 48 | 2019 Aug |
| 37 | NR_HUMAN_I60_2021M5 (@tome v3) | Human family of nuclear receptors | - | 48 | 2021 May |
| 38 | NR_HUMAN_I70 (@tome v2.2) | Nuclear Receptor (models > 70% sequence identity) | - | 26 | 2016 Apr |
| 39 | NR_HUMAN_I90 (@tome v2.2) | Nuclear Receptor (models > 90% sequence identity) | - | 21 | 2016 Apr |
| 40 | NR_HUMAN_I90_2019M4 (@tome v3) | Human family of nuclear receptors | - | 48 | 2019 Apr |
| 41 | NR_HUMAN_I90_2019M8 (@tome v3) | Human family of nuclear receptors | - | 48 | 2019 Aug |
| 42 | NR_HUMAN_I90_2021M5 (@tome v3) | Human family of nuclear receptors | - | 48 | 2021 May |
| 43 | NR_MOUSE_I50 (@tome v2.2) | Nuclear Receptor (models > 50% sequence identity) | - | 46 | 2016 Jan |
| 44 | NR_XENLA_I50 (@tome v2.2) | Nuclear Receptor (models > 50% sequence identity) | - | 20 | 2016 Jan |
| 45 | NR_XENOPE_I60_2019M6 (@tome v3) | Xenope family of nuclear receptors | - | 20 | 2019 Jun |
| 46 | NR_ZFISH_I60_2019M6 (@tome v3) | Zebrafish family of nuclear receptors | - | 20 | 2019 Jun |
| 47 | PK_HUMAN_I30_2020M9 (@tome v3) | Protein Kinase family | - | 484 | 2020 Sept |
| 48 | PK_HUMAN_I60_2019M5 (@tome v3) | Protein Kinase family | - | 484 | 2019 May |
| 49 | PK_HUMAN_I90_2019M4 (@tome v3) | Protein Kinase family | - | 241 | 2019 Apr |
| 50 | RAL_KIN_HUMAN (@tome v2.2) | Protein Kinase | - | 48 | 2012 Nov |
| 51 | SLC_HUMAN (@tome v2.2) | Transmembrane transporter | - | 392 | 2015 Dec |
| 52 | SLC_HUMAN (@tome v2.3) | The solute carrier (SLC) group of membrane transport proteins | - | 393 | 2017 Oct |
| 53 | UP000000534 (@tome v2.2) | WOLTR: Wolbachia sp. subsp. Brugia malayi (strain TRS) | - | 805 | 2015 Dec |
| 54 | UP000000586 (@tome v2.3) | STRR6: Streptococcus pneumoniae (strain ATCC BAA-255 / R6) | - | 2030 | 2017 Dec |
| 55 | UP000000751 (@tome v2.2) | STAAN: Staphylococcus aureus (strain N315) | - | 2580 | 2016 Mar |
| 56 | UP000000804 (@tome v2.2) | HELPJ: Helicobacter pylori (strain J99 / ATCC 700824) | - | 1488 | 2015 Dec |
| 57 | UP000000817 (@tome v2.2) | LISMO: Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) | - | 2857 | 2016 Mar |
| 58 | UP000000823 (@tome v2.2) | STRA3: Streptococcus agalactiae serotype III | - | 1926 | 2015 Dec |
| 59 | UP000001570 (@tome v2.2) | BACSU: Bacillus subtilis 168 | - | 4188 | 2016 Aug |
| 60 | UP000001584 (@tome v2.2) | MYCTU: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) | - | 3988 | 2016 Apr |
| 61 | UP000001741 (@tome v2.3) | ACIBS: Acinetobacter baumannii (strain SDF) [509170] | - | 2767 | 2017 Oct |
| 62 | UP000002438 (@tome v2.2) | PSEAE: Pseudomonas aeruginosa (LMG 12228) | - | 5563 | 2016 Jan |
| 63 | UP000005269 (@tome v2.3) | ENTFC: Enterococcus faecium (strain DO) | - | 2671 | 2017 Dec |