@TOME V3
(Feb 2022)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
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Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : H_NR1D2_REVb: (2019-04-24 )
MEVNAGGVIAYISSSSSASSPASCHSEGSENSFQSSSSSVPSSPNSSNSDTNGNPKNGDLANIEGILKNDRIDCSMKTSKSSAPGMTKSHSGVTKFSGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQLEQENIKSSSPPSSDFAKEEVIGMVTRAHKDTFMYNQEQQENSAESMQPQRGERIPKNMEQYNLNHDHCGNGLSSHFPCSESQQHLNGQFKGRNIMHYPNGHAICIANGHCMNFSNAYTQRVCDRVPIDGFSQNENKNSYLCNTGGRMHLVCPLSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDLRSLNNMHSEELLAFKVHP
Atome Classification :
(2 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
MEVNA
G
G
V
I
A
Y
ISSSSSASSPASCHSEGSENSFQSSSSSVPSSPNSSNSDTNGNPKNG
D
L
A
N
I
E
G
I
LKND
R
I
D
C
S
MKTSKSSAPGMTKSHSGV
T
K
FS
G
M
V
L
L
C
K
V
C
G
D
V
A
S
G
F
H
Y
G
V
H
A
C
E
G
C
K
G
F
F
R
R
S
I
Q
Q
N
I
Q
Y
K
K
C
LKNEN
C
S
I
M
RM
N
R
N
R
C
Q
Q
C
R
F
K
K
C
L
S
VGMSR
D
A
V
RFGRI
P
K
R
E
K
Q
R
M
L
I
E
M
Q
S
A
M
K
T
M
M
N
S
QFSGHLQN
D
T
L
V
E
H
H
E
QTAL
P
A
Q
E
QLRPKPQL
E
Q
ENIKSSSPPSS
D
F
A
K
E
E
V
I
G
M
V
T
R
AHKDTFMY
N
Q
E
Q
QEN
S
A
ESMQPQRGERIP
K
N
M
E
Q
YNLN
H
D
HCGNG
L
S
SHFPCS
E
S
Q
Q
HLNGQFKGRNIMHYPNG
H
A
I
C
I
ANGHCMN
F
S
N
A
Y
T
Q
R
V
C
DRVPIDGFSQNENKN
S
Y
L
CNTG
G
R
M
H
L
V
CPLSKSPYVDPHK
S
G
H
E
I
W
E
E
FSMSF
T
P
A
V
K
E
V
V
E
F
A
K
RIPGFRDLSQHDQ
V
N
L
LKAG
T
F
E
V
L
M
V
R
F
A
S
L
FDAKE
R
T
V
T
F
LSGKKY
S
V
D
D
L
HSMG
A
G
D
L
L
N
S
M
F
E
F
S
E
KLN
A
L
QLS
D
E
E
M
S
L
F
T
A
V
V
L
V
SADRSGIENV
N
S
V
E
A
L
Q
E
T
L
I
R
A
L
R
T
L
I
MKNHP
N
E
A
S
I
F
T
K
L
L
L
KLP
D
L
R
S
L
N
NMH
S
E
E
L
L
A
F
KVHP
1
PsiBlast_PDB
90.37
99%
-170
- C2 -
-
4N73
1
A:
[2-199]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
L
V
C
P
M
S
K
S
P
Y
V
D
P
H
K
S
G
H
E
I
W
E
E
F
S
M
S
F
T
P
A
V
K
E
V
V
E
F
A
K
R
I
P
G
F
R
D
L
S
Q
H
D
Q
V
N
L
L
K
A
G
T
F
E
V
L
M
V
R
F
A
S
L
F
D
A
K
E
R
T
V
T
F
L
S
G
K
K
Y
S
V
D
D
L
H
S
M
G
A
G
D
L
L
N
S
M
F
E
F
S
E
K
L
N
A
L
Q
L
S
D
E
E
M
S
L
F
T
A
V
V
L
V
S
A
D
R
S
G
I
E
N
V
N
S
V
E
A
L
Q
E
T
L
I
R
A
L
R
T
L
I
M
K
N
H
P
N
E
A
S
I
F
T
K
L
L
L
K
L
P
D
L
R
S
L
N
N
M
H
S
E
E
L
L
A
F
K
V
H
-
3
PsiBlast_PDB
86.83
95%
-166
- C2 -
-
3CQV
1
A:
[1-196]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
L
V
C
P
M
S
K
S
P
Y
V
D
P
H
K
S
G
H
E
I
W
E
E
F
S
M
S
F
T
P
A
V
K
E
V
V
E
F
A
K
R
I
P
G
F
R
D
L
S
Q
H
D
Q
V
N
L
L
K
A
G
T
F
E
V
L
M
V
R
F
A
S
L
F
D
A
K
E
R
T
V
T
F
L
S
G
K
K
Y
S
V
D
D
L
H
S
M
G
A
G
D
L
L
N
S
M
F
E
F
S
E
K
L
N
A
L
Q
L
S
D
E
E
M
S
L
F
T
A
V
V
L
V
S
A
D
R
S
G
I
E
N
V
N
S
V
E
A
L
Q
E
T
L
I
R
A
L
R
T
L
I
M
K
N
H
P
N
E
A
S
I
F
T
K
L
L
L
K
L
P
D
L
R
S
L
N
N
M
H
S
E
E
L
L
A
F
K
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