@TOME V3
(Feb 2022)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : H_NR1F1_RORa: (2019-04-24 )
MNEGAPGDSDLETEARVPWSIMGHCLRTGQARMSATPTPAGEGARRDELFGILQILHQCILSSGDAFVLTGVCCSWRQNGKPPYSQKEDKEVQTGYMNAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTELHDDLSNYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLDINGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG
Atome Classification :
(7 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550....
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
MNEGAPGDSDLETEARV
P
W
S
I
M
G
H
C
L
RTGQARMSATPTPAGEGA
R
R
D
E
L
F
G
I
L
Q
I
L
H
Q
C
I
LSSG
D
A
F
V
L
T
G
V
C
CSWRQNGKPPYSQKEDKEVQTGY
M
N
A
Q
I
E
I
I
P
C
K
ICGDKSSG
I
H
Y
G
V
I
T
CE
G
C
K
G
F
F
R
RSQQSNATYSCPRQKN
C
L
IDRTSR
N
R
C
Q
H
C
R
L
Q
K
C
L
A
VGMS
R
D
A
V
K
F
G
R
M
S
K
K
Q
R
D
S
L
Y
A
E
V
Q
K
H
R
M
Q
Q
Q
Q
R
D
HQQQPGEAEPLTP
T
Y
N
ISAN
G
L
T
E
L
H
D
D
L
S
N
Y
IDGHTPEGSKADS
A
V
S
S
F
Y
L
D
IQPSPDQSGLDINGIKPEPICDYTPASGFF
P
Y
C
SFTNGETSPT
V
S
M
A
E
L
E
H
L
A
Q
N
I
S
K
S
H
L
E
T
C
Q
Y
L
R
E
E
L
Q
Q
I
T
W
Q
T
F
L
Q
E
E
I
E
N
Y
Q
N
K
Q
R
E
V
M
W
Q
L
C
A
I
K
I
T
E
A
I
Q
Y
V
V
E
F
A
K
R
I
D
G
F
M
E
L
CQND
Q
I
V
L
L
KAG
S
L
E
V
V
F
I
R
M
C
R
A
FDSQN
N
T
V
Y
FDGKYA
S
P
D
V
F
K
SLG
C
E
D
F
I
S
F
V
F
E
F
G
K
S
L
C
S
MHL
T
E
D
E
I
A
L
F
S
A
F
V
L
MSA
D
R
S
W
L
Q
E
K
V
K
I
E
K
L
Q
Q
K
I
Q
L
A
L
Q
H
V
L
Q
K
NHRED
G
I
L
T
K
L
I
C
K
V
S
T
L
R
A
L
C
G
R
H
T
E
K
L
M
A
F
K
A
I
Y
P
D
I
V
R
LHF
P
P
L
Y
K
E
L
F
T
S
EFEPAMQIDG
2
PsiBlast_PDB
94.81
100%
-172
- C1 -
-
1N83
1
A:
[18-258]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
L
E
H
L
A
Q
N
I
S
K
S
H
L
E
T
C
Q
Y
L
R
E
E
L
Q
Q
I
T
W
Q
T
F
L
Q
E
E
I
E
N
Y
Q
N
K
Q
R
E
V
M
W
Q
L
C
A
I
K
I
T
E
A
I
Q
Y
V
V
E
F
A
K
R
I
D
G
F
M
E
L
C
Q
N
D
Q
I
V
L
L
K
A
G
S
L
E
V
V
F
I
R
M
C
R
A
F
D
S
Q
N
N
T
V
Y
F
D
G
K
Y
A
S
P
D
V
F
K
S
L
G
C
E
D
F
I
S
F
V
F
E
F
G
K
S
L
C
S
M
H
L
T
E
D
E
I
A
L
F
S
A
F
V
L
M
S
A
D
R
S
W
L
Q
E
K
V
K
I
E
K
L
Q
Q
K
I
Q
L
A
L
Q
H
V
L
Q
K
N
H
R
E
D
G
I
L
T
K
L
I
C
K
V
S
T
L
R
A
L
C
G
R
H
T
E
K
L
M
A
F
K
A
I
Y
P
D
I
V
R
L
H
F
P
P
L
Y
K
E
L
F
------------
3
PsiBlast_PDB
93.49
100%
-171
- C1 -
-
1S0X
1
A:
[18-258]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
L
E
H
L
A
Q
N
I
S
K
S
H
L
E
T
C
Q
Y
L
R
E
E
L
Q
Q
I
T
W
Q
T
F
L
Q
E
E
I
E
N
Y
Q
N
K
Q
R
E
V
M
W
Q
L
C
A
I
K
I
T
E
A
I
Q
Y
V
V
E
F
A
K
R
I
D
G
F
M
E
L
C
Q
N
D
Q
I
V
L
L
K
A
G
S
L
E
V
V
F
I
R
M
C
R
A
F
D
S
Q
N
N
T
V
Y
F
D
G
K
Y
A
S
P
D
V
F
K
S
L
G
C
E
D
F
I
S
F
V
F
E
F
G
K
S
L
C
S
M
H
L
T
E
D
E
I
A
L
F
S
A
F
V
L
M
S
A
D
R
S
W
L
Q
E
K
V
K
I
E
K
L
Q
Q
K
I
Q
L
A
L
Q
H
V
L
Q
K
N
H
R
E
D
G
I
L
T
K
L
I
C
K
V
S
T
L
R
A
L
C
G
R
H
T
E
K
L
M
A
F
K
A
I
Y
P
D
I
V
R
L
H
F
P
P
L
Y
K
E
L
F
------------
1
PsiBlast_PDB
90.98
100%
-168
- C1 -
-
4S15
2
RORA_HUMAN
A:
[2-245]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
M
A
E
L
E
H
L
A
Q
N
I
S
K
S
H
L
E
T
C
Q
Y
L
R
E
E
L
Q
Q
I
T
W
Q
T
F
L
Q
E
E
I
E
N
Y
Q
N
K
Q
R
E
V
M
W
Q
L
C
A
I
K
I
T
E
A
I
Q
Y
V
V
E
F
A
K
R
I
D
G
F
M
E
L
C
Q
N
D
Q
I
V
L
L
K
A
G
S
L
E
V
V
F
I
R
M
C
R
A
F
D
S
Q
N
N
T
V
Y
F
D
G
K
Y
A
S
P
D
V
F
K
S
L
G
C
E
D
F
I
S
F
V
F
E
F
G
K
S
L
C
S
M
H
L
T
E
D
E
I
A
L
F
S
A
F
V
L
M
S
A
D
R
S
W
L
Q
E
K
V
K
I
E
K
L
Q
Q
K
I
Q
L
A
L
Q
H
V
L
Q
K
N
H
R
E
D
G
I
L
T
K
L
I
C
K
V
S
T
L
R
A
L
C
G
R
H
T
E
K
L
M
A
F
K
A
I
Y
P
D
I
V
R
L
H
F
P
P
L
Y
K
E
L
F
T
-----------
21
Blastp_CBE
88.99
100%
-161
- C1 -
-
4S15
2
B:
[2-251]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
M
A
E
L
E
H
L
A
Q
N
I
S
K
S
H
L
E
T
C
Q
Y
L
R
E
E
L
Q
Q
I
T
W
Q
T
F
L
Q
E
E
I
E
N
Y
Q
N
K
Q
R
E
V
M
W
Q
L
C
A
I
K
I
T
E
A
I
Q
Y
V
V
E
F
A
K
R
I
D
G
F
M
E
L
C
Q
N
D
Q
I
V
L
L
K
A
G
S
L
E
V
V
F
I
R
M
C
R
A
F
D
S
Q
N
N
T
V
Y
F
D
G
K
Y
A
S
P
D
V
F
K
S
L
G
C
E
D
F
I
S
F
V
F
E
F
G
K
S
L
C
S
M
H
L
T
E
D
E
I
A
L
F
S
A
F
V
L
M
S
A
D
R
S
W
L
Q
E
K
V
K
I
E
K
L
Q
Q
K
I
Q
L
A
L
Q
H
V
L
Q
K
N
H
R
E
D
G
I
L
T
K
L
I
C
K
V
S
T
L
R
A
L
C
G
R
H
T
E
K
L
M
A
F
K
A
I
Y
P
D
I
V
R
L
H
F
P
P
L
Y
K
E
L
F
T
S
E
F
E
P
A
-----
6
PsiBlast_PDB
79.27
62%
-168
- C1 -
-
1NQ7
1
RORB_RAT
A:
[1-243]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
S
E
I
D
R
I
A
Q
N
I
I
K
S
H
L
E
T
C
Q
Y
T
M
E
E
L
H
Q
L
A
W
Q
T
H
T
Y
E
E
I
K
A
Y
Q
S
K
S
R
E
A
L
W
Q
Q
C
A
I
Q
I
T
H
A
I
Q
Y
V
V
E
F
A
K
R
I
T
G
F
M
E
L
C
Q
N
D
Q
I
L
L
L
K
S
G
C
L
E
V
V
L
V
R
M
C
R
A
F
N
P
L
N
N
T
V
L
F
E
G
K
Y
G
G
M
Q
M
F
K
A
L
G
S
D
D
L
V
N
E
A
F
D
F
A
K
N
L
C
S
L
Q
L
T
E
E
E
I
A
L
F
S
S
A
V
L
I
S
P
D
R
A
W
L
L
E
P
R
K
V
Q
K
L
Q
E
K
I
Y
F
A
L
Q
H
V
I
Q
K
N
H
L
D
D
E
T
L
A
K
L
I
A
K
I
P
T
I
T
A
V
C
N
L
H
G
E
K
L
Q
V
F
K
Q
S
H
P
D
I
V
N
T
L
F
P
P
L
Y
K
E
L
F
------------
4
PsiBlast_PDB
78.09
62%
-167
- C1 -
-
1K4W
1
RORB_RAT
A:
[8-250]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
S
E
I
D
R
I
A
Q
N
I
I
K
S
H
L
E
T
C
Q
Y
T
M
E
E
L
H
Q
L
A
W
Q
T
H
T
Y
E
E
I
K
A
Y
Q
S
K
S
R
E
A
L
W
Q
Q
C
A
I
Q
I
T
H
A
I
Q
Y
V
V
E
F
A
K
R
I
T
G
F
M
E
L
C
Q
N
D
Q
I
L
L
L
K
S
G
C
L
E
V
V
L
V
R
M
C
R
A
F
N
P
L
N
N
T
V
L
F
E
G
K
Y
G
G
M
Q
M
F
K
A
L
G
S
D
D
L
V
N
E
A
F
D
F
A
K
N
L
C
S
L
Q
L
T
E
E
E
I
A
L
F
S
S
A
V
L
I
S
P
D
R
A
W
L
L
E
P
R
K
V
Q
K
L
Q
E
K
I
Y
F
A
L
Q
H
V
I
Q
K
N
H
L
D
D
E
T
L
A
K
L
I
A
K
I
P
T
I
T
A
V
C
N
L
H
G
E
K
L
Q
V
F
K
Q
S
H
P
D
I
V
N
T
L
F
P
P
L
Y
K
E
L
F
------------
5
PsiBlast_PDB
75.66
61%
-162
- C1 -
-
1N4H
1
RORB_RAT
A:
[8-251]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
S
E
I
D
R
I
A
Q
N
I
I
K
S
H
L
E
T
C
Q
Y
T
M
E
E
L
H
Q
L
A
W
Q
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H
T
Y
E
E
I
K
A
Y
Q
S
K
S
R
E
A
L
W
Q
Q
C
A
I
Q
I
T
H
A
I
Q
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V
V
E
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A
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I
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G
F
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E
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Q
N
D
Q
I
L
L
L
K
S
G
C
L
E
V
V
L
V
R
M
C
R
A
F
N
P
L
N
N
T
V
L
F
E
G
K
Y
G
G
M
Q
M
F
K
A
L
G
S
D
D
L
V
N
E
A
F
D
F
A
K
N
L
C
S
L
Q
L
T
E
E
E
I
A
L
F
S
S
A
V
L
I
S
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D
R
A
W
L
L
E
P
R
K
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E
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A
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D
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P
L
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K
E
L
F
N
-----------