@TOME V3
(Feb 2022)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : H_NR1I2_PXR: (2019-04-24 )
MEVRPKESWNHADFVHCEDTESVPGKPSVNADEEVGGPQICRVCGDKATGYHFNVMTCEGCKGFFRRAMKRNARLRCPFRKGACEITRKTRRQCQACRLRKCLESGMKKEMIMSDEAVEERRALIKRKKSERTGTQPLGVQGLTEEQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVLSSGCELPESLQAPSREEAAKWSQVRKDLCSLKVSLQLRGEDGSVWNYKPPADSGGKEIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWECGRLSYCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIHPFATPLMQELFGITGS
Atome Classification :
(3 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430..
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
MEVRPKESWNHA
D
F
V
H
CEDTESVPGKPSVNADEEVG
G
P
Q
I
C
R
VCGDKAT
G
Y
H
F
N
V
M
T
C
E
G
C
K
G
F
F
R
R
A
M
KRNA
R
L
RCPFRK
G
A
C
E
I
T
R
K
T
R
R
Q
C
Q
A
C
R
L
R
K
C
L
E
SGM
K
K
E
MIMS
D
E
A
V
E
E
R
R
A
L
I
K
R
K
KSERTGTQPLGVQGL
T
E
E
Q
R
M
M
I
R
E
L
M
D
A
Q
M
K
T
F
D
T
T
F
S
H
F
KNFRLPGVLSSGCEL
P
E
S
LQAP
S
R
E
E
A
A
K
W
S
Q
V
R
K
D
L
C
S
L
K
V
S
L
Q
L
RGEDGSVWNYKPPADS
G
G
K
E
I
F
S
L
L
P
H
M
A
D
M
S
T
Y
M
F
K
G
I
I
S
F
A
K
V
I
S
Y
F
RDLP
I
E
D
Q
I
S
L
L
K
G
A
A
F
E
L
C
Q
L
R
F
N
T
V
FNAETG
T
W
ECGR
L
S
Y
C
L
E
DTA
G
G
F
Q
Q
L
L
L
E
P
M
L
K
F
H
Y
M
L
K
K
L
QLH
E
E
E
Y
V
L
M
Q
A
I
S
LFSPDRP
G
V
L
Q
H
R
V
V
D
Q
L
Q
E
Q
F
A
I
T
L
K
S
Y
I
ECNRP
Q
P
A
H
R
F
L
F
L
K
I
M
A
M
L
T
E
L
R
SI
N
A
Q
H
T
Q
R
L
L
R
IQDIHP
F
A
T
P
L
M
Q
E
L
FGITGS
21
Blastp_CBE
92.42
100%
-157
- C1 -
-
4S0T
1
NR1I2_HUMAN
B:
[23-312]
---------------------------------------------------------------------------------------------------------------------------------------------
G
L
T
E
E
Q
R
M
M
I
R
E
L
M
D
A
Q
M
K
T
F
D
T
T
F
S
H
F
K
N
F
R
L
P
G
V
L
-------
E
S
L
Q
A
P
S
R
E
E
A
A
K
W
S
Q
V
R
K
D
L
C
S
L
K
V
S
L
Q
L
R
G
E
D
G
S
V
W
N
Y
K
P
P
A
D
S
G
G
K
E
I
F
S
L
L
P
H
M
A
D
M
S
T
Y
M
F
K
G
I
I
S
F
A
K
V
I
S
Y
F
R
D
L
P
I
E
D
Q
I
S
L
L
K
G
A
A
F
E
L
C
Q
L
R
F
N
T
V
F
N
A
E
T
G
T
W
E
C
G
R
L
S
Y
C
L
E
D
T
A
G
G
F
Q
Q
L
L
L
E
P
M
L
K
F
H
Y
M
L
K
K
L
Q
L
H
E
E
E
Y
V
L
M
Q
A
I
S
L
F
S
P
D
R
P
G
V
L
Q
H
R
V
V
D
Q
L
Q
E
Q
F
A
I
T
L
K
S
Y
I
E
C
N
R
P
Q
P
A
H
R
F
L
F
L
K
I
M
A
M
L
T
E
L
R
S
I
N
A
Q
H
T
Q
R
L
L
R
I
Q
D
I
H
P
F
A
T
P
L
M
Q
E
L
F
G
I
---
22
Blastp_CBE
92.18
99%
-142
- C1 -
-
2O9I
1
NR1I2_HUMAN
B:
[1-292]
---------------------------------------------------------------------------------------------------------------------------------------------
G
L
T
E
E
Q
R
M
M
I
R
E
L
M
D
A
Q
M
K
T
F
D
T
T
F
S
H
F
K
N
F
R
L
P
G
V
L
S
-------------
R
E
E
A
A
K
W
S
Q
V
R
K
D
L
C
S
L
K
V
S
L
Q
L
R
G
E
D
G
S
V
W
N
Y
K
P
P
A
D
S
G
G
K
E
I
F
S
L
L
P
H
M
A
D
M
S
T
Y
M
F
K
G
I
I
S
F
A
K
V
I
S
Y
F
R
D
L
P
I
E
D
Q
I
S
L
L
K
G
A
A
F
E
L
S
Q
L
R
F
N
T
V
F
N
A
E
T
G
T
W
E
C
G
R
L
S
Y
C
L
E
D
T
A
G
G
F
Q
Q
L
L
L
E
P
M
L
K
F
H
Y
M
L
K
K
L
Q
L
H
E
E
E
Y
V
L
M
Q
A
I
S
L
F
S
P
D
R
P
G
V
L
Q
H
R
V
V
D
Q
L
Q
E
Q
F
A
I
T
L
K
S
Y
I
E
C
N
R
P
Q
P
A
H
R
F
L
F
L
K
I
M
A
M
L
T
E
L
R
S
I
N
A
Q
H
T
Q
R
L
L
R
I
Q
D
I
H
P
F
A
T
P
L
M
Q
E
L
F
G
I
T
G
-
7
PsiBlast_PDB
77.98
100%
-161
- C1 -
-
4NY9
2
NR1I2_HUMAN
A:
[1-290]
---------------------------------------------------------------------------------------------------------------------------------------------
G
L
T
E
E
Q
R
M
M
I
R
E
L
M
D
A
Q
M
K
T
F
D
T
T
F
S
H
F
K
N
F
R
L
P
G
------------------------
Q
V
R
K
D
L
C
S
L
K
V
S
L
Q
L
R
G
E
D
G
S
V
W
N
Y
K
P
P
A
D
S
G
G
K
E
I
F
S
L
L
P
H
M
A
D
M
S
T
Y
M
F
K
G
I
I
S
F
A
K
V
I
S
Y
F
R
D
L
P
I
E
D
Q
I
S
L
L
K
G
A
A
F
E
L
C
Q
L
R
F
N
T
V
F
N
A
E
T
G
T
W
E
C
G
R
L
S
Y
C
L
E
------
Q
Q
L
L
L
E
P
M
L
K
F
H
Y
M
L
K
K
L
Q
L
H
E
E
E
Y
V
L
M
Q
A
I
S
L
F
S
P
D
R
P
G
V
L
Q
H
R
V
V
D
Q
L
Q
E
Q
F
A
I
T
L
K
S
Y
I
E
C
N
R
P
Q
P
A
H
R
F
L
F
L
K
I
M
A
M
L
T
E
L
R
S
I
N
A
Q
H
T
Q
R
L
L
R
I
Q
D
I
H
P
F
A
T
P
L
M
Q
E
L
F
G
I
---