@TOME V3
(Feb 2022)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : H_NR1I3_CAR: (2019-04-24 )
MASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
Atome Classification :
(2 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
MA
S
R
E
D
E
L
R
N
C
V
V
CGDQAT
G
Y
H
FN
A
L
T
C
E
G
C
K
G
F
F
R
R
T
V
S
K
SIGPTCPFAGSCEVSKTQRRHC
P
A
C
R
L
Q
K
C
L
D
AGMRK
D
M
I
L
S
A
E
A
L
A
L
R
R
A
K
Q
A
Q
R
R
A
QQTPVQL
S
K
E
Q
E
E
L
I
R
T
L
L
G
A
H
T
R
H
M
G
T
M
F
E
Q
F
V
Q
FRPP
A
H
L
F
I
HHQPL
P
T
L
A
P
V
L
P
L
V
T
H
F
A
D
I
N
T
F
M
V
L
Q
V
I
K
F
TKDLP
V
F
RSLP
I
E
D
Q
I
S
L
L
K
G
A
A
V
E
I
C
H
I
V
LN
T
T
F
C
L
QTQNFLCGP
L
R
Y
TIEDGARVSPTVG
F
Q
V
E
F
L
E
L
L
F
H
F
H
G
T
L
R
K
L
QLQEP
E
Y
V
L
L
A
A
M
A
LFSPDRPGVT
Q
R
D
E
I
D
Q
L
Q
E
E
M
A
L
T
L
Q
S
Y
I
K
GQQRRP
R
D
R
F
L
Y
A
K
L
L
G
L
L
A
E
L
R
S
I
N
E
AY
G
Y
Q
I
Q
H
IQ
G
L
S
A
M
M
P
L
L
Q
E
ICS
21
Blastp_CBE
87.94
98%
-180
- C1 -
-
1XVP
1
NR1I3_HUMAN
D:
[1-246]
------------------------------------------------------------------------------------------------------
P
V
Q
L
S
K
E
Q
E
E
L
I
R
T
L
L
G
A
H
T
R
H
M
G
T
M
F
E
Q
F
V
Q
F
R
P
P
A
H
L
F
I
H
H
Q
P
L
P
T
L
A
P
V
L
P
L
V
T
H
F
A
D
I
N
T
F
M
V
L
Q
V
I
K
F
T
K
D
L
P
V
F
R
S
L
P
I
E
D
Q
I
S
L
L
K
G
A
A
V
E
I
C
H
I
V
L
N
T
T
F
C
L
Q
T
Q
N
F
L
C
G
P
L
R
Y
T
I
E
D
G
A
R
----
V
G
F
Q
V
E
F
L
E
L
L
F
H
F
H
G
T
L
R
K
L
Q
L
Q
E
P
E
Y
V
L
L
A
A
M
A
L
F
S
P
D
R
P
G
V
T
Q
R
D
E
I
D
Q
L
Q
E
E
M
A
L
T
L
Q
S
Y
I
K
G
Q
Q
R
R
P
R
D
R
F
L
Y
A
K
L
L
G
L
L
A
E
L
R
S
I
N
E
A
Y
G
Y
Q
I
Q
H
I
Q
G
L
S
A
M
M
P
L
L
Q
E
I
C
S
3
PsiBlast_PDB
52.79
68%
-167
- C1 -
-
1XNX
1
NR1I3_MOUSE
A:
[12-243]
-------------------------------------------------------------------------------------------------------
L
Q
L
N
Q
Q
Q
K
E
L
V
Q
I
L
L
G
A
H
T
R
H
V
G
P
L
F
D
Q
F
V
Q
F
K
P
P
A
Y
L
F
M
H
H
R
P
F
Q
P
R
G
P
V
L
P
L
L
T
H
F
A
D
I
N
T
F
M
V
Q
Q
I
I
K
F
T
K
D
L
P
L
F
R
S
L
T
M
E
D
Q
I
S
L
L
K
G
A
A
V
E
I
L
H
I
S
L
N
T
T
F
C
L
Q
T
E
N
F
F
C
G
P
L
C
Y
K
M
E
D
A
V
H
----
A
G
F
Q
Y
E
F
L
E
S
I
L
H
F
H
K
N
L
K
G
L
H
L
Q
E
P
E
Y
V
L
M
A
A
T
A
L
F
S
P
D
R
P
G
V
T
Q
R
E
E
I
D
Q
L
Q
E
E
M
A
L
I
L
N
N
H
I
M
E
Q
Q
S
R
L
Q
S
R
F
L
Y
A
K
L
M
G
L
L
A
D
L
R
S
I
N
N
A
Y
S
Y
E
L
Q
R
L
E
E
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