@TOME V3
(Feb 2022)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : H_NR5A1_STF1: (2019-04-25 )
MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFKLETGPPMGVPPPPPPAPDYVLPPSLHGPEPKGLAAGPPAGPLGDFGAPALPMAVPGAHGPLAGYLYPAFPGRAIKSEYPEPYASPPQPGLPYGYPEPFSGGPNVPELILQLLQLEPDEDQVRARILGCLQEPTKSRPDQPAAFGLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLALQLDRQEFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQT
Atome Classification :
(8 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.........260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
MDY
S
Y
DE
D
L
D
E
L
C
PVCGDKVSG
Y
H
Y
G
L
L
T
C
E
S
C
K
G
F
F
K
R
T
VQNNK
H
Y
T
CTESQSCKI
D
K
T
QRKRC
P
F
C
R
F
Q
K
C
L
T
VG
M
R
L
E
A
V
R
A
D
R
MRGGRNKFG
P
M
Y
K
R
D
R
A
L
K
Q
Q
K
K
A
QIRAN
G
F
K
LETGPPMGVPPPPPPAPDYVLPPSLHGPEPKGLAAGPPAGPLGDFGAPALPMAVPGAHGPLAGYLYPAFPGR
A
I
KSEYPEPYASPPQPGLPYGYPEPFSGGP
N
V
P
E
L
I
L
Q
L
LQLEP
D
E
D
Q
V
R
A
R
I
L
G
C
L
QE--PTKSRPDQ
P
A
A
F
G
L
L
C
R
MA
D
Q
T
F
I
S
I
V
D
W
A
R
R
C
M
V
F
K
E
L
E
V
A
D
Q
M
T
L
L
Q
N
C
W
S
E
L
L
V
F
D
H
I
Y
R
Q
V
QHGKEG
S
I
L
L
V
TGQ
E
V
E
L
T
T
V
A
T
Q
A
G
S
L
L
H
S
L
V
L
R
A
Q
E
L
V
L
Q
L
L
A
L
QLD
R
Q
E
F
V
C
L
K
F
I
I
L
F
S
L
D
L
K
F
LNN
H
I
L
V
K
D
A
Q
EKAN
A
A
L
LD
Y
T
LCHYPH
C
G
D
K
F
Q
Q
L
L
L
C
L
V
E
V
R
A
L
S
M
Q
A
K
E
Y
L
Y
H
K
HLGNEMPR
N
N
L
L
I
E
M
L
Q
AKQT
2
PsiBlast_PDB
94.23
99%
-160
- C1 -
-
4QK4
6
STF1_HUMAN
A:
[2-245]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
G
P
N
V
P
E
L
I
L
Q
L
L
Q
L
E
P
D
E
D
Q
V
R
A
R
I
L
G
S
L
Q
E
--
P
T
K
S
R
P
D
Q
P
A
A
F
G
L
L
C
R
M
A
D
Q
T
F
I
S
I
V
D
W
A
R
R
C
M
V
F
K
E
L
E
V
A
D
Q
M
T
L
L
Q
N
C
W
S
E
L
L
V
F
D
H
I
Y
R
Q
V
Q
H
G
K
E
G
S
I
L
L
V
T
G
Q
E
V
E
L
T
T
V
A
T
Q
A
G
S
L
L
H
S
L
V
L
R
A
Q
E
L
V
L
Q
L
L
A
L
Q
L
D
R
Q
E
F
V
C
L
K
F
I
I
L
F
S
L
D
L
K
F
L
N
N
H
I
L
V
K
D
A
Q
E
K
A
N
A
A
L
L
D
Y
T
L
C
H
Y
P
H
S
G
D
K
F
Q
Q
L
L
L
C
L
V
E
V
R
A
L
S
M
Q
A
K
E
Y
L
Y
H
K
H
L
G
N
E
M
P
R
N
N
L
L
I
E
M
L
Q
A
K
Q
T
1
PsiBlast_PDB
92.53
99%
-160
- C1 -
-
4QJR
1
STF1_HUMAN
A:
[2-245]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
G
P
N
V
P
E
L
I
L
Q
L
L
Q
L
E
P
D
E
D
Q
V
R
A
R
I
L
G
S
L
Q
E
--
P
T
K
S
R
P
D
Q
P
A
A
F
G
L
L
C
R
M
A
D
Q
T
F
I
S
I
V
D
W
A
R
R
C
M
V
F
K
E
L
E
V
A
D
Q
M
T
L
L
Q
N
C
W
S
E
L
L
V
F
D
H
I
Y
R
Q
V
Q
H
G
K
E
G
S
I
L
L
V
T
G
Q
E
V
E
L
T
T
V
A
T
Q
A
G
S
L
L
H
S
L
V
L
R
A
Q
E
L
V
L
Q
L
L
A
L
Q
L
D
R
Q
E
F
V
C
L
K
F
I
I
L
F
S
L
D
L
K
F
L
N
N
H
I
L
V
K
D
A
Q
E
K
A
N
A
A
L
L
D
Y
T
L
C
H
Y
P
H
S
G
D
K
F
Q
Q
L
L
L
C
L
V
E
V
R
A
L
S
M
Q
A
K
E
Y
L
Y
H
K
H
L
G
N
E
M
P
R
N
N
L
L
I
E
M
L
Q
A
K
Q
T
21
Blastp_CBE
84.64
99%
-160
- C1 -
-
1ZDT
1
STF1_HUMAN
B:
[1-239]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
V
P
E
L
I
L
Q
L
L
Q
L
E
P
D
E
D
Q
V
R
A
R
I
L
G
S
L
Q
E
--
P
T
K
S
R
P
D
Q
P
A
A
F
G
L
L
C
R
M
A
D
Q
T
F
I
S
I
V
D
W
A
R
R
C
M
V
F
K
E
L
E
V
A
D
Q
M
T
L
L
Q
N
C
W
S
E
L
L
V
F
D
H
I
Y
R
Q
V
Q
H
G
K
E
G
S
I
L
L
V
T
G
Q
E
V
E
L
T
T
V
A
T
Q
A
G
S
L
L
H
S
L
V
L
R
A
Q
E
L
V
L
Q
L
L
A
L
Q
L
D
R
Q
E
F
V
C
L
K
F
I
I
L
F
S
L
D
L
K
F
L
N
N
H
I
L
V
K
D
A
Q
E
K
A
N
A
A
L
L
D
Y
T
L
C
H
Y
P
H
S
G
D
K
F
Q
Q
L
L
L
C
L
V
E
V
R
A
L
S
M
Q
A
K
E
Y
L
Y
H
K
H
L
G
N
E
M
P
R
N
N
L
L
I
E
M
L
Q
A
K
--
3
PsiBlast_PDB
79.51
99%
-175
- C1 -
-
1YOW
1
STF1_HUMAN
A:
[2-239]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
V
P
E
L
M
L
Q
L
L
Q
L
E
P
D
E
D
Q
V
R
A
R
I
L
G
C
L
Q
E
--
P
--------
A
A
F
G
L
L
C
R
M
A
D
Q
T
F
I
S
I
V
D
W
A
R
R
C
M
V
F
K
E
L
E
V
A
D
Q
M
T
L
L
Q
N
C
W
S
E
L
L
V
F
D
H
I
Y
R
Q
V
Q
H
G
K
E
G
S
I
L
L
V
T
G
Q
E
V
E
L
T
T
V
A
T
Q
A
G
S
L
L
H
S
L
V
L
R
A
Q
E
L
V
L
Q
L
L
A
L
Q
L
D
R
Q
E
F
V
C
L
K
F
I
I
L
F
S
L
D
L
K
F
L
N
N
H
I
L
V
K
D
A
Q
E
K
A
N
A
A
L
L
D
Y
T
L
C
H
Y
P
H
C
G
D
K
F
Q
Q
L
L
L
C
L
V
E
V
R
A
L
S
M
Q
A
K
E
Y
L
Y
H
K
H
L
G
N
E
M
P
R
N
N
L
L
I
E
M
L
Q
A
---
4
PsiBlast_PDB
56.98
93%
-155
- C1 -
-
1YP0
1
STF1_MOUSE
A:
[15-239]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
D
Q
V
R
A
R
I
V
G
C
L
Q
E
--
P
A
K
S
R
S
D
Q
P
A
P
F
S
L
L
C
R
M
A
D
Q
T
F
I
S
I
V
D
W
A
R
R
C
M
V
F
K
E
L
E
V
A
D
Q
M
T
L
L
Q
N
C
W
S
E
L
L
V
L
D
H
I
Y
R
Q
V
Q
Y
G
K
E
D
S
I
L
L
V
T
G
Q
E
V
E
L
S
T
V
A
V
Q
A
G
S
L
L
H
S
L
V
L
R
A
Q
E
L
V
L
Q
L
H
A
L
Q
L
D
R
Q
E
F
V
C
L
K
F
L
I
L
F
S
L
D
V
K
F
L
N
N
H
S
L
V
K
D
A
Q
E
K
A
N
A
A
L
L
D
Y
T
L
C
H
Y
P
H
C
G
D
K
F
Q
Q
L
L
L
C
L
V
E
V
R
A
L
S
M
Q
A
K
E
Y
L
Y
H
K
H
L
G
N
E
M
P
R
N
N
L
L
I
E
M
L
Q
A
K
Q
-
15
PsiBlast_PDB
44.87
60%
-93
- C1 -
-
3PLZ
1
NR5A2_HUMAN
A:
[16-254]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
I
P
H
L
I
L
E
L
L
K
C
E
P
D
E
P
Q
V
Q
A
K
I
M
A
Y
L
Q
Q
E--------
K
L
S
T
F
G
L
M
C
K
M
A
D
Q
T
L
F
S
I
V
E
W
A
R
S
S
I
F
F
R
E
L
K
V
D
D
Q
M
K
L
L
Q
N
C
W
S
E
L
L
I
L
D
H
I
Y
R
Q
V
V
H
G
K
E
G
S
I
F
L
V
T
G
Q
Q
V
D
Y
S
I
I
A
S
Q
A
G
A
T
L
N
N
L
M
S
H
A
Q
E
L
V
A
K
L
R
S
L
Q
F
D
Q
R
E
F
V
C
L
K
F
L
V
L
F
S
L
D
V
K
N
L
E
N
F
Q
L
V
E
G
V
Q
E
Q
V
N
A
A
L
L
D
Y
T
M
C
N
Y
P
Q
Q
T
E
K
F
G
Q
L
L
L
R
L
P
E
I
R
A
I
S
M
Q
A
E
E
Y
L
Y
Y
K
H
L
N
G
D
V
P
Y
N
N
L
L
I
E
M
L
H
A
---
14
PsiBlast_PDB
38.51
60%
-49
* C1 *
-
1YOK
1
A:
[15-253]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
I
P
H
L
I
L
E
L
L
K
C
E
P
D
E
P
Q
V
Q
A
K
I
M
A
Y
L
Q
Q
EQ
A
N
R
S
---
K
L
S
T
F
G
L
M
C
K
M
A
D
Q
T
L
F
S
I
V
E
W
A
R
S
S
I
F
F
R
E
L
K
V
D
D
Q
M
K
L
L
Q
N
C
W
S
E
L
L
I
L
D
H
I
Y
R
Q
V
V
H
G
K
E
G
S
I
F
L
V
T
G
Q
Q
V
D
Y
S
I
I
A
S
Q
A
G
A
T
L
N
N
L
M
S
H
A
Q
E
L
V
A
K
L
R
S
L
Q
F
D
Q
R
E
F
V
C
L
K
F
L
V
L
F
S
L
D
V
K
N
L
E
N
F
Q
L
V
E
G
V
Q
E
Q
V
N
A
A
L
L
D
Y
T
M
C
N
Y
P
Q
Q
T
E
K
F
G
Q
L
L
L
R
L
P
E
I
R
A
I
S
M
Q
A
E
E
Y
L
Y
Y
K
H
L
N
G
D
V
P
Y
N
N
L
L
I
E
M
L
H
A
---
13
PsiBlast_PDB
31.42
60%
-52
- C1 -
-
1ZDU
2
A:
[3-242]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
I
P
H
L
I
L
E
L
L
K
C
E
P
D
E
P
Q
V
Q
A
K
I
M
A
Y
L
Q
Q
EQ-------
K
L
S
T
F
G
L
M
C
K
M
A
D
Q
T
L
F
S
I
V
E
W
A
R
S
S
I
F
F
R
E
L
K
V
D
D
Q
M
K
L
L
Q
N
C
W
S
E
L
L
I
L
D
H
I
Y
R
Q
V
V
H
G
K
E
G
S
I
F
L
V
T
G
Q
Q
V
D
Y
S
I
I
A
S
Q
A
G
A
T
L
N
N
L
M
S
H
A
Q
E
L
V
A
K
L
R
S
L
Q
F
D
Q
R
E
F
V
C
L
K
F
L
V
L
F
S
L
D
V
K
N
L
E
N
F
Q
L
V
E
G
V
Q
E
Q
V
N
A
A
L
L
D
Y
T
M
C
N
Y
P
Q
Q
T
E
K
F
G
Q
L
L
L
R
L
P
E
I
R
A
I
S
M
Q
A
E
E
Y
L
Y
Y
K
H
L
N
G
D
V
P
Y
N
N
L
L
I
E
M
L
H
A
---