@TOME V3
(Feb 2022)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : H_NR2C1_TR2: (2021-05-27 )
MATIEEIAHQIIEQQMGEIVTEQQTGQKIQIVTALDHNTQGKQFILTNHDGSTPSKVILARQDSTPGKVFLTTPDAAGVNQLFFTTPDLSAQHLQLLTDNSPDQGPNKVFDLCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQDSVQCERKPIEVSREKSSNCAASTEKIYIRKDLRSPLTATPTFVTDSESTRSTGLLDSGMFMNIHPSGVKTESAVLMTSDKAESCQGDLSTLANVVTSLANLGKTKDLSQNSNEMSMIESLSNDDTSLCEFQEMQTNGDVSRAFDTLAKALNPGESTACQSSVAGMEGSVHLITGDSSINYTEKEGPLLSDSHVAFRLTMPSPMPEYLNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVLFSPDHPSLENMEQIEKFQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIGNIRIDSVIPHILKMEPADYNSQIIGHSI
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200..----.....210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
MA
T
I
E
E
I
A
H
Q
I
I
E
Q
Q
M
G
E
I
V
T
E
QQTG
Q
K
I
Q
I
V
T
A
LDHNTQG
K
Q
F
I
L
TNHDGSTP
S
K
V
I
L
A
RQDSTP
G
K
V
F
L
TTPDAAGV
N
Q
L
F
F
TTPDL
S
A
Q
H
L
Q
LLTDNSPDQGP
N
K
V
F
D
L
C
V
V
CGDKASGRH
Y
G
A
V
T
C
E
G
C
K
G
F
F
K
R
S
I
R
K
N
L
V
Y
SCRGSKD
C
I
INKHHR
N
R
C
Q
Y
C
R
L
Q
R
C
I
A
FGMKQDSVQCERKPIEVSREKSSNCAAST----
E
K
I
Y
I
R
K
DLRSPLTAT
P
T
F
VTDSESTRSTGLLDS
G
M
F
M
N
IHPSGVKT
E
S
A
V
L
M
TSD
K
A
E
S
C
QG
D
L
S
T
L
A
N
V
V
T
S
L
A
NLGKTKDLSQNS
N
E
M
S
M
I
E
S
LSNDDT
S
L
C
E
F
Q
E
MQTNG
D
V
S
R
A
F
D
T
L
A
K
ALNPGE
S
T
A
C
Q
S
SVAGMEG
S
V
H
L
I
TGDSSINYTEKEGPLLSDS
H
V
A
F
R
L
TMPSP
M
P
E
Y
L
N
V
H
Y
IGESA
S
R
L
L
F
L
S
M
H
W
A
LSI
P
S
F
Q
ALGQEN
S
I
S
L
V
K
A
Y
W
N
E
L
F
T
L
G
L
A
Q
C
W
Q
V
M
N
V
A
T
I
L
A
T
F
V
N
C
L
H
N
S
L
Q
Q
D
K
M
S
T
E
R
R
K
L
L
M
E
H
I
F
K
L
Q
E
F
C
N
S
M
V
K
L
C
IDGYE
Y
A
Y
L
K
A
I
V
L
FSPDHP
S
L
E
N
M
E
Q
I
E
K
F
Q
E
K
A
Y
V
E
F
Q
D
Y
I
T
KTYPD
D
T
Y
R
L
S
R
L
L
L
R
L
P
A
L
R
L
M
N
A
T
I
T
E
E
L
F
F
K
G
L
IGNI
R
I
D
S
V
I
P
H
I
LKMEPADYNSQIIGHSI
2
PsiBlast_PDB
66.36
36%
-192
- C1 -
-
3CJW
-
COT2_HUMAN
A:
[207-400]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
I
E
N
I
C
E
L
A
A
R
M
L
F
S
A
V
E
W
A
R
N
I
P
F
F
P
D
L
Q
I
T
D
Q
V
A
L
L
R
L
T
W
S
E
L
F
V
L
N
A
A
Q
C
S
M
P
L
H
V
A
P
-----------------------
V
A
F
M
D
H
I
R
I
F
Q
E
Q
V
E
K
L
K
A
L
H
V
D
S
A
E
Y
S
C
L
K
A
I
V
L
F
T
S
D
A
C
G
L
S
D
V
A
H
V
E
S
L
Q
E
K
S
Q
C
A
L
E
E
Y
V
R
S
Q
Y
P
N
Q
P
T
R
F
G
K
L
L
L
R
L
P
S
L
R
T
V
S
S
S
V
I
E
Q
L
F
F
V
R
L
V
G
K
T
P
I
E
T
L
I
R
D
M
L
----------------
1
PsiBlast_PDB
50.45
72%
-
- C1 -
-
3P0U
-
NR2C2_HUMAN
A:
[368-601]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Q
S
T
P
I
I
E
V
E
G
P
L
L
S
D
T
H
V
T
F
K
L
T
M
P
S
P
M
P
E
Y
L
N
V
H
Y
I
C
E
S
A
S
R
L
L
F
L
S
M
H
W
A
R
S
I
P
A
F
Q
A
L
G
Q
D
C
N
T
S
L
V
R
A
C
W
N
E
L
F
T
L
G
L
A
Q
C
A
Q
V
M
S
L
S
T
I
L
A
A
I
V
N
-------------
D
R
I
K
Q
V
M
E
H
I
W
K
L
Q
E
F
C
N
S
M
A
K
L
D
I
D
G
Y
E
Y
A
Y
L
K
A
I
V
L
F
S
P
D
H
P
G
L
T
S
T
S
Q
I
E
K
F
Q
E
A
A
Q
M
E
L
Q
D
Y
V
Q
A
T
Y
S
E
D
T
Y
R
L
A
R
I
L
V
R
L
P
A
L
R
L
M
S
S
N
I
T
E
E
L
F
F
T
G
L
I
G
N
V
S
I
D
S
I
I
P
Y
I
L
K
M
--------------
16
PsiBlast_PDB
36.09
64%
-150
- C1 -
-
4UMM
-
?
A:
[3-78]
---------------------------------------------------------------------------------------------------------------
L
C
S
I
C
G
D
R
A
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
A
C
R
E
E
R
N
C
I
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
C
G
M
K
R
E
A
V
Q
E
E
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
34.79
62%
-149
- C1 -
-
4CN2
1
RXRA_HUMAN
C:
[9-85]
---------------------------------------------------------------------------------------------------------------
I
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
E
E
R
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Blastp_CBE
33.71
62%
-161
- C1 -
-
6FBR
3
?
B:
[9-85]
---------------------------------------------------------------------------------------------------------------
I
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
----
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
E
E
R
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
33.31
46%
-138
- C1 -
-
3DZU
1
RXRA_HUMAN
A:
[139-411]
---------------------------------------------------------------------------------------------------------------
I
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
E
E
R
---
Q
R
------------AN--
E
D
M
P
V
E
R
I
L
E
A
E
L
A
V
E
P
K
T
E
T
Y
V
E
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
33.25
62%
-142
- C1 -
-
4CN5
-
?
A:
[9-84]
---------------------------------------------------------------------------------------------------------------
I
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
E
E
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
32.24
62%
-137
- C1 -
-
6FBQ
-
?
A:
[9-84]
---------------------------------------------------------------------------------------------------------------
I
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
E
E
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
32.19
62%
-136
- C1 -
-
1DSZ
-
B:
[7-83]
---------------------------------------------------------------------------------------------------------------
I
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
E
E
R
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Blastp_CBE
31.92
62%
-138
- C1 -
-
6XWG
1
?
C:
[9-85]
---------------------------------------------------------------------------------------------------------------
I
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
E
E
R
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
31.92
62%
-137
- C1 -
-
2HAN
-
A:
[12-87]
---------------------------------------------------------------------------------------------------------------
L
C
S
I
C
G
D
R
A
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
A
C
R
E
N
R
N
C
I
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
T
C
G
M
K
R
E
A
V
Q
E
E
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
31.71
46%
-131
- C1 -
-
3E00
1
RXRA_HUMAN
A:
[139-411]
---------------------------------------------------------------------------------------------------------------
I
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
E
E
R
---
Q
R
------------AN--
E
D
M
P
V
E
R
I
L
E
A
E
L
A
V
E
P
K
T
E
T
Y
V
E
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
31.59
62%
-142
- C1 -
-
6FBR
-
?
A:
[9-83]
---------------------------------------------------------------------------------------------------------------
I
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
E
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
31.42
62%
-144
- C1 -
-
1YNW
-
B:
[5-77]
---------------------------------------------------------------------------------------------------------------
I
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
30.60
62%
-139
- C1 -
-
4CN7
-
?
A:
[9-79]
---------------------------------------------------------------------------------------------------------------
I
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
29.86
62%
-137
* C1 *
-
1R0O
-
A:
[10-84]
---------------------------------------------------------------------------------------------------------------
L
C
S
I
C
G
D
R
A
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
A
C
R
E
N
R
N
C
I
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
T
C
G
M
K
R
E
A
V
Q
E
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
29.84
62%
-134
- C1 -
-
4CN3
-
RXRA_HUMAN
A:
[9-83]
---------------------------------------------------------------------------------------------------------------
I
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
E
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
28.80
46%
-122
- C1 -
-
4NQA
-
RXRA_HUMAN
A:
[37-294]
---------------------------------------------------------------------------------------------------------------
I
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
E
E
R
---
Q
R
G
-----------SSAN
E
D
M
P
V
E
R
I
L
E
A
E
L
A
V
E
P
K
T
E
T
Y
V
E
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
28.19
63%
-129
- C1 -
-
1R0N
-
A:
[5-77]
---------------------------------------------------------------------------------------------------------------
I
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
28.02
46%
-142
- C1 -
-
5UAN
1
RXRA_HUMAN
A:
[37-360]
---------------------------------------------------------------------------------------------------------------
I
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
----------
C
L
I
D
K
R
Q
R
N
-
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
E
E
R
-----------------AN--
E
D
M
P
V
E
R
I
L
E
A
E
L
A
V
E
P
K
T
E
T
Y
V
E
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------