@TOME V3
(Feb 2022)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : H_NR2C2_TR4: (2021-05-27 )
MTSPSPRIQIISTDSAVASPQRIQIVTDQQTGQKIQIVTAVDASGSPKQQFILTSPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLATDSKAETSQGALGTLANVVTSLANLSESLNNGDTSEIQPEDQSASEITRAFDTLAKALNTTDSSSSPSLADGIDTSGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAEYNGQITGASL
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190........200.......210.......220...---....230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590....
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
MTSPS
P
R
I
Q
I
I
STDSAVAS
P
Q
R
I
Q
I
V
TDQQTG
Q
K
I
Q
I
V
T
A
VDASGSP
K
Q
Q
F
I
L
TSPDGAGT
G
K
V
I
L
ASPETSSA
K
Q
L
I
F
TTSDNLVPG
R
I
Q
I
V
TD
S
A
S
V
E
R
L
LGKTDVQR
P
Q
V
V
E
Y
C
V
VCGDKASGRHY
G
A
V
S
C
E
G
C
K
G
F
F
K
R
S
V
R
KN
L
T
Y
SCRSNQ
D
C
I
INKHHR
N
R
C
Q
F
C
R
L
K
K
C
L
E
MGM
K
M
E
S
V
Q
SER-KPFDVQREKPSNCAAST
E
K
I
Y
I
R
K
DLRSPLIATP---
T
F
V
ADKDGARQTGLLDPG
M
L
V
NIQ
Q
P
L
IRED
G
T
V
L
L
ATDSKAETSQG
A
L
G
T
L
A
N
V
V
T
S
L
A
N
L
S
E
SLNNGDTSEIQPEDQ
S
A
S
E
I
T
R
A
F
D
T
L
A
K
A
LNTTDSSSSPSLADGIDTSGG
G
S
I
H
V
I
SRDQST
P
I
I
E
VEGPLLSD
T
H
V
T
F
K
LTMPSP
M
P
E
Y
L
N
V
H
Y
I
CESAS
R
L
L
F
L
S
M
H
W
A
RS
I
P
A
F
Q
A
LGQDC
N
T
S
L
V
R
A
C
W
N
E
L
F
T
L
G
L
A
Q
C
A
Q
V
M
S
L
S
T
I
L
A
A
I
V
N
H
L
Q
N
S
I
Q
EDKL
S
G
D
R
I
K
Q
V
M
E
H
I
W
K
L
Q
E
F
C
N
S
M
A
KLDIDG
Y
E
Y
A
Y
L
K
A
I
V
L
FSPDHPGLT
S
T
S
Q
I
E
K
F
Q
E
K
A
Q
M
E
L
Q
D
Y
V
Q
K
TYSE
D
T
Y
R
L
A
R
I
L
V
R
L
P
A
L
R
L
M
S
SN
I
T
E
E
L
F
F
T
GLIGNV
S
I
D
S
I
I
P
Y
I
L
K
M
ETAEYN
G
Q
ITGASL
2
PsiBlast_PDB
64.00
38%
-184
- C1 -
-
3CJW
-
COT2_HUMAN
A:
[207-396]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
I
E
N
I
C
E
L
A
A
R
M
L
F
S
A
V
E
W
A
R
N
I
P
F
F
P
D
L
Q
I
T
D
Q
V
A
L
L
R
L
T
W
S
E
L
F
V
L
N
A
A
Q
C
S
M
P
L
H
V
A
P
-----------------------
V
A
F
M
D
H
I
R
I
F
Q
E
Q
V
E
K
L
K
A
L
H
V
D
S
A
E
Y
S
C
L
K
A
I
V
L
F
T
S
D
A
C
G
L
S
D
V
A
H
V
E
S
L
Q
E
K
S
Q
C
A
L
E
E
Y
V
R
S
Q
Y
P
N
Q
P
T
R
F
G
K
L
L
L
R
L
P
S
L
R
T
V
S
S
S
V
I
E
Q
L
F
F
V
R
L
V
G
K
T
P
I
E
T
L
I
--------------------
1
PsiBlast_PDB
50.49
99%
-
- C1 -
-
3P0U
-
NR2C2_HUMAN
A:
[367-601]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
D
Q
S
T
P
I
I
E
V
E
G
P
L
L
S
D
T
H
V
T
F
K
L
T
M
P
S
P
M
P
E
Y
L
N
V
H
Y
I
C
E
S
A
S
R
L
L
F
L
S
M
H
W
A
R
S
I
P
A
F
Q
A
L
G
Q
D
C
N
T
S
L
V
R
A
C
W
N
E
L
F
T
L
G
L
A
Q
C
A
Q
V
M
S
L
S
T
I
L
A
A
I
V
N
-------------
D
R
I
K
Q
V
M
E
H
I
W
K
L
Q
E
F
C
N
S
M
A
K
L
D
I
D
G
Y
E
Y
A
Y
L
K
A
I
V
L
F
S
P
D
H
P
G
L
T
S
T
S
Q
I
E
K
F
Q
E
A
A
Q
M
E
L
Q
D
Y
V
Q
A
T
Y
S
E
D
T
Y
R
L
A
R
I
L
V
R
L
P
A
L
R
L
M
S
S
N
I
T
E
E
L
F
F
T
G
L
I
G
N
V
S
I
D
S
I
I
P
Y
I
L
K
M
--------------
7
PsiBlast_PDB
34.64
68%
-139
- C1 -
-
4CN5
-
?
A:
[10-84]
--------------------------------------------------------------------------------------------------------------------
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
E
E
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
33.99
68%
-143
- C1 -
-
4CN2
1
RXRA_HUMAN
C:
[10-85]
--------------------------------------------------------------------------------------------------------------------
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
E
E
R
-
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Blastp_CBE
33.80
68%
-156
- C1 -
-
6FBR
3
?
B:
[10-85]
--------------------------------------------------------------------------------------------------------------------
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
----
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
E
E
R
-
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
33.22
68%
-131
- C1 -
-
6FBQ
-
?
A:
[10-84]
--------------------------------------------------------------------------------------------------------------------
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
E
E
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
33.06
36%
-100
- C1 -
-
3E00
1
RXRA_HUMAN
A:
[137-457]
-----------------------------------------------------------------------------------------------------------------
K
H
I
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
E
E
R
Q
R
--------------
A
N
E
D
M
P
V
E
R
I
L
E
A
E
L
A
V
E
P
KTE
T
Y
V
E
A
N
M
G
L
N
P
S
S
P
N
D
P
--
V
T
N
I
C
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
32.39
47%
-109
- C1 -
-
4NQA
1
RXRA_HUMAN
A:
[38-173]
--------------------------------------------------------------------------------------------------------------------
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
E
E
R
Q
R
G
-----------
S
S
A
N
E
D
M
P
V
E
R
I
L
E
A
E
L
A
V
E
P
KTE
T
Y
-
E
A
N
M
G
L
N
P
S
S
P
N
D
P
--
V
T
N
I
C
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Blastp_CBE
32.32
68%
-136
* C1 *
-
6XWG
1
?
C:
[10-85]
--------------------------------------------------------------------------------------------------------------------
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
E
E
R
-
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
31.67
68%
-131
- C1 -
-
2HAN
-
A:
[13-87]
--------------------------------------------------------------------------------------------------------------------
C
S
I
C
G
D
R
A
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
A
C
R
E
N
R
N
C
I
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
T
C
G
M
K
R
E
A
V
Q
E
E
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
31.45
68%
-131
- C1 -
-
1DSZ
-
B:
[8-83]
--------------------------------------------------------------------------------------------------------------------
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
E
E
R
-
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
31.05
68%
-131
- C1 -
-
4CN3
-
RXRA_HUMAN
A:
[10-83]
--------------------------------------------------------------------------------------------------------------------
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
E
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
30.71
64%
-136
- C1 -
-
1YNW
-
B:
[6-77]
--------------------------------------------------------------------------------------------------------------------
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
30.38
68%
-130
- C1 -
-
4CN7
-
?
A:
[10-79]
--------------------------------------------------------------------------------------------------------------------
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
29.46
36%
-115
- C1 -
-
3DZU
1
RXRA_HUMAN
A:
[137-410]
-----------------------------------------------------------------------------------------------------------------
K
H
I
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
E
E
R
Q
R
--------------
A
N
E
D
M
P
V
E
R
I
L
E
A
E
L
A
-
E
P
KTE
T
Y
V
E
A
N
M
G
L
N
P
S
S
P
N
D
P
--
V
T
N
I
C
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
29.42
68%
-133
- C1 -
-
6FBR
-
?
A:
[10-83]
--------------------------------------------------------------------------------------------------------------------
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
E
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
29.38
67%
-121
- C1 -
-
2EBL
-
COT1_HUMAN
A:
[10-86]
--------------------------------------------------------------------------------------------------------------------
C
V
V
C
G
D
K
S
S
G
K
H
Y
G
Q
F
T
C
E
G
C
K
S
F
F
K
R
S
V
R
R
N
L
T
Y
T
C
R
A
N
R
N
C
P
I
D
Q
H
H
R
N
Q
C
Q
Y
C
R
L
K
K
C
L
K
V
G
M
R
R
E
A
V
Q
R
G
S
-
G
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
29.12
68%
-129
- C1 -
-
1R0O
-
A:
[11-84]
--------------------------------------------------------------------------------------------------------------------
C
S
I
C
G
D
R
A
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
A
C
R
E
N
R
N
C
I
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
T
C
G
M
K
R
E
A
V
Q
E
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
26.59
67%
-116
- C1 -
-
1RXR
-
A:
[6-81]
--------------------------------------------------------------------------------------------------------------------
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
A
L
A
M
G
M
K
R
E
A
V
Q
E
E
R
-
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
24.98
68%
-120
- C1 -
-
1R0N
-
A:
[6-78]
--------------------------------------------------------------------------------------------------------------------
C
A
I
C
G
D
R
S
S
G
K
H
Y
G
V
Y
S
C
E
G
C
K
G
F
F
K
R
T
V
R
K
D
L
T
Y
T
C
R
D
N
K
D
C
L
I
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
M
G
M
K
R
E
A
V
Q
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------