@TOME V3
(Feb 2022)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : H_NR1B3_RARg: (2019-04-19 )
MATNKERLFAAGALGPGSGYPGAGFPFAFPGALRGSPPFEMLSPSFRGLGQPDLPKEMASLSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEVKEEGSPDSYELSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEMFEDDSSQPGPHPNASSEDEVPGGQGKGGLKSPA
Atome Classification :
(10 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450..
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
MAT
N
K
E
R
L
F
AAGALGPGSGYPGAGFPFAFPGALRGSP
P
F
E
ML
S
P
S
FRGLGQPD
L
P
K
E
M
A
S
L
S
V
E
TQSTSSEEMVPSSPSPPPPPRVYK
P
C
F
V
CNDKSSGYHYGVSS
C
E
G
C
K
G
F
F
R
R
S
I
QKN
M
V
Y
T
CHRDKNC
I
I
N
K
V
T
R
N
R
C
Q
Y
C
R
L
Q
K
C
F
E
VGM
S
K
E
A
V
RNDR
N
K
K
K
K
E
V
KEEGSPDSYEL
S
P
Q
L
E
E
L
I
T
K
V
S
K
A
H
Q
E
T
F
P
S
L
C
Q
LGKYTTNSSAD
H
R
V
Q
L
DLG
L
W
D
K
F
S
E
L
A
T
K
C
I
I
K
I
V
E
F
A
K
RLPGFTGL
S
I
A
D
Q
I
T
L
L
K
A
A
C
L
D
I
L
M
L
R
I
CTRYTPEQD
T
M
TFSDG
L
T
L
N
R
T
QMHNAGF
G
P
L
T
D
L
V
F
A
FAG
Q
L
LPLEMDDTE
T
G
L
L
S
A
I
C
L
ICGDRMDLEE
P
E
K
V
D
K
L
Q
E
P
L
L
E
A
L
R
L
Y
A
R
RRRPSQP
Y
M
F
P
R
M
L
M
K
I
TDLRGISTKGA
E
R
A
I
T
L
K
M
EIPGPM
P
P
L
I
R
E
M
LENPEMFEDDSSQPGPHPNASSEDEVPGGQGKGGLKSPA
1
PsiBlast_PDB
52.21
100%
-137
- C1 -
-
6FX0
2
RARG_HUMAN
A:
[180-417]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
E
L
S
P
Q
L
E
E
L
I
T
K
V
S
K
A
H
Q
E
T
F
P
S
L
C
Q
L
G
K
Y
T
T
N
S
S
A
D
H
R
V
Q
L
D
L
G
L
W
D
K
F
S
E
L
A
T
K
C
I
I
K
I
V
E
F
A
K
R
L
P
G
F
T
G
L
S
I
A
D
Q
I
T
L
L
K
A
A
C
L
D
I
L
M
L
R
I
C
T
R
Y
T
P
E
Q
D
T
M
T
F
S
D
G
L
T
L
N
R
T
Q
M
H
N
A
G
F
G
P
L
T
D
L
V
F
A
F
A
G
Q
L
L
P
L
E
M
D
D
T
E
T
G
L
L
S
A
I
C
L
I
C
G
D
R
M
D
L
E
E
P
E
K
V
D
K
L
Q
E
P
L
L
E
A
L
R
L
Y
A
R
R
R
R
P
S
Q
P
Y
M
F
P
R
M
L
M
K
I
T
D
L
R
G
I
S
T
K
G
A
E
R
A
I
T
L
K
M
E
I
P
G
P
M
P
P
L
I
R
E
M
L
E
-------------------------------------
9
PsiBlast_PDB
51.07
100%
-138
- C1 -
-
1FCY
2
RARG_HUMAN
A:
[2-236]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
P
Q
L
E
E
L
I
T
K
V
S
K
A
H
Q
E
T
F
P
S
L
C
Q
L
G
K
Y
T
T
N
S
S
A
D
H
R
V
Q
L
D
L
G
L
W
D
K
F
S
E
L
A
T
K
C
I
I
K
I
V
E
F
A
K
R
L
P
G
F
T
G
L
S
I
A
D
Q
I
T
L
L
K
A
A
C
L
D
I
L
M
L
R
I
C
T
R
Y
T
P
E
Q
D
T
M
T
F
S
D
G
L
T
L
N
R
T
Q
M
H
N
A
G
F
G
P
L
T
D
L
V
F
A
F
A
G
Q
L
L
P
L
E
M
D
D
T
E
T
G
L
L
S
A
I
C
L
I
C
G
D
R
M
D
L
E
E
P
E
K
V
D
K
L
Q
E
P
L
L
E
A
L
R
L
Y
A
R
R
R
R
P
S
Q
P
Y
M
F
P
R
M
L
M
K
I
T
D
L
R
G
I
S
T
K
G
A
E
R
A
I
T
L
K
M
E
I
P
G
P
M
P
P
L
I
R
E
M
L
E
-------------------------------------
12
PsiBlast_PDB
50.16
100%
-137
- C1 -
-
1FD0
2
RARG_HUMAN
A:
[1-235]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
P
Q
L
E
E
L
I
T
K
V
S
K
A
H
Q
E
T
F
P
S
L
C
Q
L
G
K
Y
T
T
N
S
S
A
D
H
R
V
Q
L
D
L
G
L
W
D
K
F
S
E
L
A
T
K
C
I
I
K
I
V
E
F
A
K
R
L
P
G
F
T
G
L
S
I
A
D
Q
I
T
L
L
K
A
A
C
L
D
I
L
M
L
R
I
C
T
R
Y
T
P
E
Q
D
T
M
T
F
S
D
G
L
T
L
N
R
T
Q
M
H
N
A
G
F
G
P
L
T
D
L
V
F
A
F
A
G
Q
L
L
P
L
E
M
D
D
T
E
T
G
L
L
S
A
I
C
L
I
C
G
D
R
M
D
L
E
E
P
E
K
V
D
K
L
Q
E
P
L
L
E
A
L
R
L
Y
A
R
R
R
R
P
S
Q
P
Y
M
F
P
R
M
L
M
K
I
T
D
L
R
G
I
S
T
K
G
A
E
R
A
I
T
L
K
M
E
I
P
G
P
M
P
P
L
I
R
E
M
L
E
-------------------------------------
10
PsiBlast_PDB
49.84
100%
-137
- C1 -
-
1FCX
2
RARG_HUMAN
A:
[1-235]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
P
Q
L
E
E
L
I
T
K
V
S
K
A
H
Q
E
T
F
P
S
L
C
Q
L
G
K
Y
T
T
N
S
S
A
D
H
R
V
Q
L
D
L
G
L
W
D
K
F
S
E
L
A
T
K
C
I
I
K
I
V
E
F
A
K
R
L
P
G
F
T
G
L
S
I
A
D
Q
I
T
L
L
K
A
A
C
L
D
I
L
M
L
R
I
C
T
R
Y
T
P
E
Q
D
T
M
T
F
S
D
G
L
T
L
N
R
T
Q
M
H
N
A
G
F
G
P
L
T
D
L
V
F
A
F
A
G
Q
L
L
P
L
E
M
D
D
T
E
T
G
L
L
S
A
I
C
L
I
C
G
D
R
M
D
L
E
E
P
E
K
V
D
K
L
Q
E
P
L
L
E
A
L
R
L
Y
A
R
R
R
R
P
S
Q
P
Y
M
F
P
R
M
L
M
K
I
T
D
L
R
G
I
S
T
K
G
A
E
R
A
I
T
L
K
M
E
I
P
G
P
M
P
P
L
I
R
E
M
L
E
-------------------------------------
11
PsiBlast_PDB
49.57
100%
-137
- C1 -
-
1FCZ
2
RARG_HUMAN
A:
[1-235]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
P
Q
L
E
E
L
I
T
K
V
S
K
A
H
Q
E
T
F
P
S
L
C
Q
L
G
K
Y
T
T
N
S
S
A
D
H
R
V
Q
L
D
L
G
L
W
D
K
F
S
E
L
A
T
K
C
I
I
K
I
V
E
F
A
K
R
L
P
G
F
T
G
L
S
I
A
D
Q
I
T
L
L
K
A
A
C
L
D
I
L
M
L
R
I
C
T
R
Y
T
P
E
Q
D
T
M
T
F
S
D
G
L
T
L
N
R
T
Q
M
H
N
A
G
F
G
P
L
T
D
L
V
F
A
F
A
G
Q
L
L
P
L
E
M
D
D
T
E
T
G
L
L
S
A
I
C
L
I
C
G
D
R
M
D
L
E
E
P
E
K
V
D
K
L
Q
E
P
L
L
E
A
L
R
L
Y
A
R
R
R
R
P
S
Q
P
Y
M
F
P
R
M
L
M
K
I
T
D
L
R
G
I
S
T
K
G
A
E
R
A
I
T
L
K
M
E
I
P
G
P
M
P
P
L
I
R
E
M
L
E
-------------------------------------
6
PsiBlast_PDB
46.78
100%
-133
- C1 -
-
1EXA
2
RARG_HUMAN
A:
[5-240]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
P
Q
L
E
E
L
I
T
K
V
S
K
A
H
Q
E
T
F
P
S
L
C
Q
L
G
K
Y
T
T
N
S
S
A
D
H
R
V
Q
L
D
L
G
L
W
D
K
F
S
E
L
A
T
K
C
I
I
K
I
V
E
F
A
K
R
L
P
G
F
T
G
L
S
I
A
D
Q
I
T
L
L
K
A
A
C
L
D
I
L
M
L
R
I
C
T
R
Y
T
P
E
Q
D
T
M
T
F
S
D
G
L
T
L
N
R
T
Q
M
H
N
A
G
F
G
P
L
T
D
L
V
F
A
F
A
G
Q
L
L
P
L
E
M
D
D
T
E
T
G
L
L
S
A
I
C
L
I
C
G
D
R
M
D
L
E
E
P
E
K
V
D
K
L
Q
E
P
L
L
E
A
L
R
L
Y
A
R
R
R
R
P
S
Q
P
Y
M
F
P
R
M
L
M
K
I
T
D
L
R
G
I
S
T
K
G
A
E
R
A
I
T
L
K
M
E
I
P
G
P
M
P
P
L
I
R
E
M
L
E
-------------------------------------
5
PsiBlast_PDB
46.32
100%
-131
- C1 -
-
4LBD
1
RARG_HUMAN
A:
[26-262]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
P
Q
L
E
E
L
I
T
K
V
S
K
A
H
Q
E
T
F
P
S
L
C
Q
L
G
K
Y
T
T
N
S
S
A
D
H
R
V
Q
L
D
L
G
L
W
D
K
F
S
E
L
A
T
K
C
I
I
K
I
V
E
F
A
K
R
L
P
G
F
T
G
L
S
I
A
D
Q
I
T
L
L
K
A
A
C
L
D
I
L
M
L
R
I
C
T
R
Y
T
P
E
Q
D
T
M
T
F
S
D
G
L
T
L
N
R
T
Q
M
H
N
A
G
F
G
P
L
T
D
L
V
F
A
F
A
G
Q
L
L
P
L
E
M
D
D
T
E
T
G
L
L
S
A
I
C
L
I
C
G
D
R
M
D
L
E
E
P
E
K
V
D
K
L
Q
E
P
L
L
E
A
L
R
L
Y
A
R
R
R
R
P
S
Q
P
Y
M
F
P
R
M
L
M
K
I
T
D
L
R
G
I
S
T
K
G
A
E
R
A
I
T
L
K
M
E
I
P
G
P
M
P
P
L
I
R
E
M
L
E
N
------------------------------------
7
PsiBlast_PDB
42.97
100%
-133
- C1 -
-
1EXX
2
RARG_HUMAN
A:
[5-240]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
P
Q
L
E
E
L
I
T
K
V
S
K
A
H
Q
E
T
F
P
S
L
C
Q
L
G
K
Y
T
T
N
S
S
A
D
H
R
V
Q
L
D
L
G
L
W
D
K
F
S
E
L
A
T
K
C
I
I
K
I
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E
F
A
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P
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F
T
G
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A
D
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A
A
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E
Q
D
T
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N
R
T
Q
M
H
N
A
G
F
G
P
L
T
D
L
V
F
A
F
A
G
Q
L
L
P
L
E
M
D
D
T
E
T
G
L
L
S
A
I
C
L
I
C
G
D
R
M
D
L
E
E
P
E
K
V
D
K
L
Q
E
P
L
L
E
A
L
R
L
Y
A
R
R
R
R
P
S
Q
P
Y
M
F
P
R
M
L
M
K
I
T
D
L
R
G
I
S
T
K
G
A
E
R
A
I
T
L
K
M
E
I
P
G
P
M
P
P
L
I
R
E
M
L
E
-------------------------------------
8
PsiBlast_PDB
41.67
99%
-134
- C1 -
-
5M24
2
RARG_HUMAN
A:
[9-244]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
P
Q
L
E
E
L
I
T
K
V
S
K
A
H
Q
E
T
F
P
S
L
C
Q
L
G
K
Y
T
T
N
S
S
A
D
H
R
V
Q
L
D
L
G
L
W
D
K
F
S
E
L
A
T
K
C
I
I
K
I
V
E
F
A
K
R
L
P
G
F
T
G
L
S
I
A
D
Q
I
T
L
L
K
A
A
C
L
D
I
L
M
L
R
I
C
T
R
Y
T
P
E
Q
D
T
M
T
F
S
D
G
L
T
L
N
R
T
Q
M
H
N
A
G
F
G
P
L
T
D
L
V
F
A
F
A
G
Q
L
L
P
L
E
M
D
D
T
E
T
G
L
L
S
A
I
C
L
I
C
G
D
R
M
D
L
E
E
P
E
K
V
D
K
L
Q
E
P
L
L
E
A
L
R
L
Y
A
R
R
R
R
P
E
Q
P
Y
M
F
P
R
M
L
M
K
I
T
D
L
R
G
I
S
T
K
G
A
E
R
A
I
T
L
K
M
E
I
P
G
P
M
P
P
L
I
R
E
M
L
E
-------------------------------------
4
PsiBlast_PDB
37.79
100%
-125
- C1 -
-
3LBD
1
RARG_HUMAN
A:
[26-262]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
P
Q
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N
------------------------------------