@TOME V3
(Feb 2022)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
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Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
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Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : H_NR2B2_RXRb: (2019-04-20 )
MSWAARPPFLPQRHAAGQCGPVGVRKEMHCGVASRWRRRRPWLDPAAAAAAAVAGGEQQTPEPEPGEAGRDGMGDSGRDSRSPDSSSPNPLPQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLGSPFPVISSSMGSPGLPPPAPPGFSGPVSSPQINSTVSLPGGGSGPPEDVKPPVLGVRGLHCPPPPGGPGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPEEMPVDRILEAELAVEQKSDQGVEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLA
Atome Classification :
(5 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
MSWAARPPFLPQRHAAGQCGPVG
V
R
K
E
M
H
C
G
V
A
S
R
W
R
RRRPWL
D
P
A
A
A
A
A
A
A
VAGGEQQTPEPEPGEAGRDGMGDSGRDSRSPDSSSPNPLPQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLGSPF
P
V
I
SSSMGSPGLPPPAPPGFSGPVSSPQIN
S
T
V
SLPGGGSGPPEDVKPPVLGVRGLHCPPPPGGPGAG
K
R
L
C
A
ICGDRSSGKHY
G
V
Y
SCE
G
C
K
G
F
F
K
R
T
I
R
K
D
L
T
YSCRDNKDC
T
V
D
K
R
Q
R
N
R
C
Q
Y
C
R
Y
Q
K
C
L
A
TG
M
K
R
E
A
V
Q
E
E
R
Q
RGKDKDGDGEGAGGAPEEM
P
V
D
R
I
L
E
A
E
L
A
V
EQKSDQGVEGPGGTGGSGSSPN
D
P
V
T
N
I
C
Q
A
A
D
K
Q
L
F
T
L
V
E
W
A
K
RIPHFSSLPLDD
Q
V
I
L
L
RAGWN
E
L
L
I
A
SFSHR
S
I
DVRD
G
I
L
L
A
T
G
L
H
V
HRNSAHSA
G
V
G
A
I
F
D
R
V
L
T
E
L
V
S
K
M
R
D
MRM
D
K
T
E
L
G
C
L
R
A
I
I
L
FNPDAKGLS
N
P
S
E
V
E
V
L
R
E
K
V
Y
A
S
L
E
T
Y
C
K
QKY
P
E
QQ
G
R
F
A
K
L
L
L
R
L
P
A
L
R
S
I
G
L
K
C
L
E
H
L
F
F
F
K
L
IGDT
P
I
D
T
F
L
M
E
M
L
EAPHQLA
5
PsiBlast_PDB
78.31
100%
-146
- C1 -
-
1UHL
1
A:
[1-231]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
M
P
V
D
R
I
L
E
A
E
L
A
V
E
Q
-----------------
S
P
N
D
P
V
T
N
I
C
Q
A
A
D
K
Q
L
F
T
L
V
E
W
A
K
R
I
P
H
F
S
S
L
P
L
D
D
Q
V
I
L
L
R
A
G
W
N
E
L
L
I
A
S
F
S
H
R
S
I
D
V
R
D
G
I
L
L
A
T
G
L
H
V
H
R
N
S
A
H
S
A
G
V
G
A
I
F
D
R
V
L
T
E
L
V
S
K
M
R
D
M
R
M
D
K
T
E
L
G
C
L
R
A
I
I
L
F
N
P
D
A
K
G
L
S
N
P
S
E
V
E
V
L
R
E
K
V
Y
A
S
L
E
T
Y
C
K
Q
K
Y
P
E
Q
Q
G
R
F
A
K
L
L
L
R
L
P
A
L
R
S
I
G
L
K
C
L
E
H
L
F
F
F
K
L
I
G
D
T
P
I
D
T
F
L
M
E
M
L
E
A
-----
9
PsiBlast_PDB
69.06
100%
-161
- C1 -
-
1H9U
1
RXRB_HUMAN
A:
[1-224]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
V
D
R
I
L
E
A
E
L
A
V
-----------------------
P
V
T
N
I
C
Q
A
A
D
K
Q
L
F
T
L
V
E
W
A
K
R
I
P
H
F
S
S
L
P
L
D
D
Q
V
I
L
L
R
A
G
W
N
E
L
L
I
A
S
F
S
H
R
S
I
D
V
R
D
G
I
L
L
A
T
G
L
H
V
H
R
N
S
A
H
S
A
G
V
G
A
I
F
D
R
V
L
T
E
L
V
S
K
M
R
D
M
R
M
D
K
T
E
L
G
C
L
R
A
I
I
L
F
N
P
D
A
K
G
L
S
N
P
S
E
V
E
V
L
R
E
K
V
Y
A
S
L
E
T
Y
C
K
Q
K
Y
P
E
Q
Q
G
R
F
A
K
L
L
L
R
L
P
A
L
R
S
I
G
L
K
C
L
E
H
L
F
F
F
K
L
I
G
D
T
P
I
D
T
F
L
-----------
23
Blastp_CBE
68.23
100%
-157
- C1 -
-
1H9U
1
RXRB_HUMAN
B:
[1-224]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
V
D
R
I
L
E
A
E
L
A
V
-----------------------
P
V
T
N
I
C
Q
A
A
D
K
Q
L
F
T
L
V
E
W
A
K
R
I
P
H
F
S
S
L
P
L
D
D
Q
V
I
L
L
R
A
G
W
N
E
L
L
I
A
S
F
S
H
R
S
I
D
V
R
D
G
I
L
L
A
T
G
L
H
V
H
R
N
S
A
H
S
A
G
V
G
A
I
F
D
R
V
L
T
E
L
V
S
K
M
R
D
M
R
M
D
K
T
E
L
G
C
L
R
A
I
I
L
F
N
P
D
A
K
G
L
S
N
P
S
E
V
E
V
L
R
E
K
V
Y
A
S
L
E
T
Y
C
K
Q
K
Y
P
E
Q
Q
G
R
F
A
K
L
L
L
R
L
P
A
L
R
S
I
G
L
K
C
L
E
H
L
F
F
F
K
L
I
G
D
T
P
I
D
T
F
L
-----------
21
Blastp_CBE
68.16
100%
-155
- C1 -
-
1H9U
1
D:
[1-224]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
V
D
R
I
L
E
A
E
L
A
V
-----------------------
P
V
T
N
I
C
Q
A
A
D
K
Q
L
F
T
L
V
E
W
A
K
R
I
P
H
F
S
S
L
P
L
D
D
Q
V
I
L
L
R
A
G
W
N
E
L
L
I
A
S
F
S
H
R
S
I
D
V
R
D
G
I
L
L
A
T
G
L
H
V
H
R
N
S
A
H
S
A
G
V
G
A
I
F
D
R
V
L
T
E
L
V
S
K
M
R
D
M
R
M
D
K
T
E
L
G
C
L
R
A
I
I
L
F
N
P
D
A
K
G
L
S
N
P
S
E
V
E
V
L
R
E
K
V
Y
A
S
L
E
T
Y
C
K
Q
K
Y
P
E
Q
Q
G
R
F
A
K
L
L
L
R
L
P
A
L
R
S
I
G
L
K
C
L
E
H
L
F
F
F
K
L
I
G
D
T
P
I
D
T
F
L
-----------
22
Blastp_CBE
67.74
100%
-157
- C1 -
-
1H9U
1
RXRB_HUMAN
C:
[1-224]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
V
D
R
I
L
E
A
E
L
A
V
-----------------------
P
V
T
N
I
C
Q
A
A
D
K
Q
L
F
T
L
V
E
W
A
K
R
I
P
H
F
S
S
L
P
L
D
D
Q
V
I
L
L
R
A
G
W
N
E
L
L
I
A
S
F
S
H
R
S
I
D
V
R
D
G
I
L
L
A
T
G
L
H
V
H
R
N
S
A
H
S
A
G
V
G
A
I
F
D
R
V
L
T
E
L
V
S
K
M
R
D
M
R
M
D
K
T
E
L
G
C
L
R
A
I
I
L
F
N
P
D
A
K
G
L
S
N
P
S
E
V
E
V
L
R
E
K
V
Y
A
S
L
E
T
Y
C
K
Q
K
Y
P
E
Q
Q
G
R
F
A
K
L
L
L
R
L
P
A
L
R
S
I
G
L
K
C
L
E
H
L
F
F
F
K
L
I
G
D
T
P
I
D
T
F
L
-----------