@TOME V3
(Feb 2022)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : H_NR3B1_ERRa: (2019-04-23 )
MSSQVVGIEPLYIKAEPASPDSPKGSSETETEPPVALAPGPAPTRCLPGHKEEEDGEGAGPGEQGGGKLVLSSLPKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQACRFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAAPVNALVSHLLVVEPEKLYAMPDPAGPDGHLPAVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEALLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKVLAHFYGVKLEGKVPMHKLFLEMLEAMMD
Atome Classification :
(3 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
MSSQ
V
V
GI
E
P
L
Y
I
KAEPASPDSPKGSSETETEP
P
V
A
LAPGPAPTRCLPGHKEEEDGEGAGPGEQGG
G
K
L
V
L
S
SL
P
K
R
L
C
L
V
C
GDVASGYHYGVA
S
C
E
A
C
K
A
F
F
K
R
TIQG
S
I
E
YSCPASN
E
C
E
I
T
K
R
R
R
K
A
C
Q
A
C
R
F
T
K
C
L
R
V
G
M
L
K
EGVR
L
D
R
VRG
G
R
Q
K
YKRRPEVDPLPFPGPFPAG
P
L
AVAGGPRKTAA
P
V
N
A
L
V
S
H
L
L
V
V
E
P
E
K
LYAMPDPAGPDGH
L
P
A
V
A
T
L
C
D
L
FDR
E
I
V
V
T
I
S
W
A
KSIPGFSSL
S
L
S
D
Q
M
S
V
L
Q
S
V
W
M
E
V
L
V
L
G
V
A
QRSLP
L
Q
D
E
L
A
F
A
E
D
LVLDEEGARAAG
L
G
E
L
G
A
A
L
L
Q
L
V
R
R
L
Q
A
L
RLE
R
E
E
Y
V
L
L
K
A
L
ALANSD
S
V
H
IE
D
A
E
A
V
E
Q
L
R
E
A
L
H
E
A
L
L
E
Y
EAGRAGPGG
G
A
E
R
RRA
G
R
L
L
L
T
L
P
L
L
R
Q
T
A
G
K
V
L
A
H
F
YG
V
K
LEGKV
P
M
H
K
L
F
L
E
M
L
E
A
MMD
1
PsiBlast_PDB
64.80
100%
-152
- C1 -
-
3K6P
1
ERR1_HUMAN
A:
[18-247]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
V
N
A
L
V
S
H
L
L
V
V
E
P
E
K
L
Y
A
M
P
-------
H
L
P
A
V
A
T
L
C
D
L
F
D
R
E
I
V
V
T
I
S
W
A
K
S
I
P
G
F
S
S
L
S
L
S
D
Q
M
S
V
L
Q
S
V
W
M
E
V
L
V
L
G
V
A
Q
R
S
L
P
L
Q
D
E
L
A
F
A
E
D
L
V
L
D
E
E
G
A
R
A
A
G
L
G
E
L
G
A
A
L
L
Q
L
V
R
R
L
Q
A
L
R
L
E
R
E
E
Y
V
L
L
K
A
L
A
L
A
N
S
D
S
V
H
I
E
D
A
E
A
V
E
Q
L
R
E
A
L
H
E
A
L
L
E
Y
E
A
G
R
----
G
G
A
E
R
R
-
A
G
R
L
L
L
T
L
P
L
L
R
Q
T
A
G
K
V
L
A
H
F
Y
G
V
-
L
E
G
K
V
P
M
H
K
L
F
L
E
M
L
E
A
M
M
-
22
Blastp_CBE
41.31
99%
-149
- C1 -
-
2PJL
1
ERR1_HUMAN
B:
[17-245]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
V
N
A
L
V
S
H
L
L
V
V
E
P
E
K
L
Y
A
M
---------
L
P
A
V
A
T
L
S
D
L
F
D
R
E
I
V
V
T
I
S
W
A
K
S
I
P
G
F
S
S
L
S
L
S
D
Q
M
S
V
L
Q
S
V
W
M
E
V
L
V
L
G
V
A
Q
R
S
L
P
L
Q
D
E
L
A
F
A
E
D
L
V
L
D
E
E
G
A
R
A
A
G
L
G
E
L
G
A
A
L
L
Q
L
V
R
R
L
Q
A
L
R
L
E
R
E
E
Y
V
L
L
K
A
L
A
L
A
N
S
D
S
V
H
I
E
D
A
E
A
V
E
Q
L
R
E
A
L
H
E
A
L
L
E
Y
E
A
G
---------
R
R
R
A
G
R
L
L
L
T
L
P
L
L
R
Q
T
A
G
K
V
L
A
H
F
Y
G
V
K
L
E
G
K
V
P
M
H
K
L
F
L
E
M
L
E
A
M
--
3
PsiBlast_PDB
39.12
99%
-151
- C1 -
-
2PJL
1
ERR1_HUMAN
A:
[17-245]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
V
N
A
L
V
S
H
L
L
V
V
E
P
E
K
L
Y
A
M
---------
L
P
A
V
A
T
L
S
D
L
F
D
R
E
I
V
V
T
I
S
W
A
K
S
I
P
G
F
S
S
L
S
L
S
D
Q
M
S
V
L
Q
S
V
W
M
E
V
L
V
L
G
V
A
Q
R
S
L
P
L
Q
D
E
L
A
F
A
E
D
L
V
L
D
E
E
G
A
R
A
A
G
L
G
E
L
G
A
A
L
L
Q
L
V
R
R
L
Q
A
L
R
L
E
R
E
E
Y
V
L
L
K
A
L
A
L
A
N
S
D
S
V
H
I
E
D
A
E
A
V
E
Q
L
R
E
A
L
H
E
A
L
L
E
Y
E
A
G
---------
R
R
R
A
G
R
L
L
L
T
L
P
L
L
R
Q
T
A
G
K
V
L
A
H
F
Y
G
V
K
L
E
G
K
V
P
M
H
K
L
F
L
E
M
L
E
A
M
--