@TOME V3
(Feb 2022)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : CDC7_HUMAN: (2019-05-18 )
MEASLGIQMDEPMAFSPQRDRFQAEGSLKKNEQNFKLAGVKKDIEKLYEAVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIAMPYLEHESFLDILNSLSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKSHIITGNKIPLSGPVPKELDQQSTTKASVKRPYTNAQIQIKQGKDGKEGSVGLSVQRSVFGERNFNIHSSISHESPAVKLMKQSKTVDVLSRKLATKKKAISTKVMNSAVMRKTASSCPASLTCDCYATDKVCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHASHQPAISEKTDHKASCLVQTPPGQYSGNSFKKGDSNSCEHCFDEYNTNLEGWNEVPDEAYDLLDKLLDLNPASRITAEEALLHPFFKDMSL
Atome Classification :
(2 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570..
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
MEASLGIQMDEPMAFSPQRDRFQAEGSLKKNEQN
F
K
LA
G
V
K
K
D
I
E
K
L
Y
E
A
V
P
Q
L
S
N
V
F
K
IEDKIGEGTF
S
S
V
Y
L
A
T
A
Q
L
QVGPE
E
K
I
A
L
K
H
LIPTSH
P
I
R
I
A
A
E
L
Q
C
L
T
VAGGQDN
V
M
G
V
K
Y
C
FRKND
H
V
V
I
AMPYLE
H
E
S
F
L
D
I
L
N
SL
S
F
Q
E
V
R
E
Y
M
L
N
L
F
K
A
L
K
R
I
H
Q
FG
I
V
HRDVKPS
N
F
L
Y
N
R
RL
K
K
Y
A
L
V
D
FGLAQGTH
D
T
K
I
E
L
L
K
F
V
Q
S
E
A
Q
Q
E
R
CSQNK
S
H
I
ITGNKIPLSGPV
P
K
E
L
D
QQSTTKASVKRPYTN
A
Q
I
Q
I
KQGKDGKEGSV
G
L
S
V
Q
R
S
VFGERN
F
N
I
HSSISHE
S
P
A
V
K
L
M
K
QS
K
T
V
D
V
L
S
R
K
L
A
T
K
K
K
A
I
S
T
K
V
M
N
S
A
V
M
R
K
T
ASSCPA
S
L
T
C
D
CYA
T
D
K
V
C
S
I
C
L
S
R
R
Q
QVAPRAGTPGFRA
P
E
V
L
T
KCPNQ
T
T
A
I
D
M
W
S
A
G
V
I
F
L
S
L
LSGRYPFYKASD
D
L
T
A
L
A
Q
I
M
T
IRGS
R
E
T
I
Q
A
A
K
T
F
G
K
S
ILCSKEV
P
A
Q
D
L
R
K
L
C
E
R
L
RGMDSSTPK
L
T
S
DIQGHASHQPAISEKTDHK
A
S
C
L
V
QTPPGQYSGNSFKKGDSN
S
C
E
H
C
F
D
E
YNTNLEGWNEV
P
D
E
A
Y
D
L
L
D
K
L
LDLNPASRI
T
A
E
E
A
L
L
H
P
F
F
K
DMSL
22
HHSearch
75.08
100%
-145
- C1 -
-
4F9B
1
CDC7_HUMAN
A:
[9-206]
-------------------------------------------
I
E
K
L
Y
E
A
V
P
Q
L
S
N
V
F
K
I
E
D
K
I
G
E
G
T
F
S
S
V
Y
L
A
T
A
Q
L
Q
V
G
P
E
E
K
I
A
L
K
H
L
I
P
T
S
H
P
I
R
I
A
A
E
L
Q
C
L
T
V
A
G
G
Q
D
N
V
M
G
V
K
Y
C
F
R
K
N
D
H
V
V
I
A
M
P
Y
L
E
H
E
S
F
L
D
I
L
N
S
L
S
F
Q
E
V
R
E
Y
M
L
N
L
F
K
A
L
K
R
I
H
Q
F
G
I
V
H
R
D
V
K
P
S
N
F
L
Y
N
R
R
L
K
K
Y
A
L
V
D
F
G
L
A
Q
G
T
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21
HHSearch
74.45
100%
-142
- C1 -
-
4F9C
1
CDC7_HUMAN
A:
[8-216]
------------------------------------------
D
I
E
K
L
Y
E
A
V
P
Q
L
S
N
V
F
K
I
E
D
K
I
G
E
G
T
F
S
S
V
Y
L
A
T
A
Q
L
Q
V
G
P
E
E
K
I
A
L
K
H
L
I
P
T
S
H
P
I
R
I
A
A
E
L
Q
C
L
T
V
A
G
G
Q
D
N
V
M
G
V
K
Y
C
F
R
K
N
D
H
V
V
I
A
M
P
Y
L
E
H
E
S
F
L
D
I
L
N
S
L
S
F
Q
E
V
R
E
Y
M
L
N
L
F
K
A
L
K
R
I
H
Q
F
G
I
V
H
R
D
V
K
P
S
N
F
L
Y
N
R
R
L
K
K
Y
A
L
V
D
F
G
L
A
Q
G
T
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