@TOME V3
(Feb 2022)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : CDK16_HUMAN: (2019-05-18 )
MDRMKKIKRQLSMTLRGGRGIDKTNGAPEQIGLDESGGGGGSDPGEAPTRAAPGELRSARGPLSSAPEIVHEDLKMGSDGESDQASATSSDEVQSPVRVRMRNHPPRKISTEDINKRLSLPADIRLPEGYLEKLTLNSPIFDKPLSRRLRRVSLSEIGFGKLETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLSLGERIHKLPDTTSIFALKEIQLQKEASLRSSSMPDSGRPAFRVVDTEF
Atome Classification :
(3 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490....
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
M
D
R
M
K
K
I
K
R
Q
L
S
M
TLRGGRGIDKTNGAPEQIGLDESGGGGGSDPGEAPTRAAPGE
L
R
SARGPLSS
A
P
E
I
V
H
E
D
L
KMGSDGESDQASATS
S
D
EVQS
P
V
R
V
RMRNHPPRKI
S
T
E
D
I
N
K
R
LSLPADIRLP
E
G
Y
L
E
K
LTLNSPIF
D
K
P
L
S
R
R
L
R
R
V
S
L
S
EIG
F
G
K
L
E
T
Y
I
K
L
DKLGEG
T
Y
A
T
V
YKGKSKL
T
D
N
L
V
A
L
K
E
I
R
L
EHEEGAP
C
T
A
I
R
E
V
S
L
L
K
D
L
K
HA
N
I
V
T
L
H
D
I
IHTE
K
S
L
T
L
V
F
E
Y
L
D
K
D
L
K
Q
Y
L
D
D
C
G
N
I
I
N
M
H
N
V
K
L
F
L
F
Q
L
L
R
G
L
A
Y
C
H
R
Q
K
V
L
H
RDLKPQ
N
L
L
INERG
E
L
K
L
A
DFGL
A
R
AKSIPTKTYSN
E
V
V
T
L
W
YR
P
P
D
I
L
LGSTDYS
T
Q
I
D
M
W
G
V
G
C
I
F
Y
EMATGRPLFPG
S
T
V
E
E
Q
L
H
F
I
F
R
I
LGTPTEETWPGILSNEEFKTYNY
P
K
Y
R
A
E
A
L
L
SHAPRLDSD
G
A
D
L
L
T
K
L
L
Q
FEGRNRI
S
A
E
D
AMKH
P
F
F
L
S
L
G
E
R
I
HKLPDTT
S
I
F
A
L
K
E
I
Q
L
Q
K
E
ASLRSSSMPDSGR
P
A
F
R
VVDTEF
2
PsiBlast_PDB
94.64
99%
-108
- C1 -
-
5G6V
4
CDK16_HUMAN
A:
[1-313]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
T
Y
I
K
L
D
K
L
G
E
G
T
Y
A
T
V
Y
K
G
K
S
K
L
T
D
N
L
V
A
L
K
E
I
R
L
E
H
E
E
G
A
P
C
T
A
I
R
E
V
S
L
L
K
D
L
K
H
A
N
I
V
T
L
H
D
I
I
H
T
E
K
S
L
T
L
V
F
E
Y
L
D
K
D
L
K
Q
Y
L
D
D
C
G
N
I
I
N
M
H
N
V
K
L
F
L
F
Q
L
L
R
G
L
A
Y
C
H
R
Q
K
V
L
H
R
D
L
K
P
Q
N
L
L
I
N
E
R
G
E
L
K
L
A
D
F
G
L
A
R
A
K
-----
T
Y
D
N
E
V
V
T
L
W
Y
R
P
P
D
I
L
L
G
S
T
D
Y
S
T
Q
I
D
M
W
G
V
G
C
I
F
Y
E
M
A
T
G
R
P
L
F
P
G
S
T
V
E
E
Q
L
H
F
I
F
R
I
L
G
T
P
T
E
E
T
W
P
G
I
L
S
N
E
E
F
K
T
Y
N
Y
P
K
Y
R
A
E
A
L
L
S
H
A
P
R
L
D
S
D
G
A
D
L
L
T
K
L
L
Q
F
E
G
R
N
R
I
S
A
E
D
A
M
K
H
P
F
F
L
S
L
G
E
R
I
H
K
L
P
D
T
T
S
I
F
A
L
K
E
I
Q
L
Q
K
E
A
----------------------
38
HHSearch
94.55
99%
-108
- C1 -
-
5G6V
4
CDK16_HUMAN
A:
[2-313]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
T
Y
I
K
L
D
K
L
G
E
G
T
Y
A
T
V
Y
K
G
K
S
K
L
T
D
N
L
V
A
L
K
E
I
R
L
E
H
E
E
G
A
P
C
T
A
I
R
E
V
S
L
L
K
D
L
K
H
A
N
I
V
T
L
H
D
I
I
H
T
E
K
S
L
T
L
V
F
E
Y
L
D
K
D
L
K
Q
Y
L
D
D
C
G
N
I
I
N
M
H
N
V
K
L
F
L
F
Q
L
L
R
G
L
A
Y
C
H
R
Q
K
V
L
H
R
D
L
K
P
Q
N
L
L
I
N
E
R
G
E
L
K
L
A
D
F
G
L
A
R
A
K
-----
T
Y
D
N
E
V
V
T
L
W
Y
R
P
P
D
I
L
L
G
S
T
D
Y
S
T
Q
I
D
M
W
G
V
G
C
I
F
Y
E
M
A
T
G
R
P
L
F
P
G
S
T
V
E
E
Q
L
H
F
I
F
R
I
L
G
T
P
T
E
E
T
W
P
G
I
L
S
N
E
E
F
K
T
Y
N
Y
P
K
Y
R
A
E
A
L
L
S
H
A
P
R
L
D
S
D
G
A
D
L
L
T
K
L
L
Q
F
E
G
R
N
R
I
S
A
E
D
A
M
K
H
P
F
F
L
S
L
G
E
R
I
H
K
L
P
D
T
T
S
I
F
A
L
K
E
I
Q
L
Q
K
E
A
----------------------
21
Blastp_CBE
93.80
99%
-119
- C1 -
-
5G6V
3
CDK16_HUMAN
B:
[1-314]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
T
Y
I
K
L
D
K
L
G
E
G
T
Y
A
T
V
Y
K
G
K
S
K
L
T
D
N
L
V
A
L
K
E
I
R
L
E
H
E
E
G
A
P
C
T
A
I
R
E
V
S
L
L
K
D
L
K
H
A
N
I
V
T
L
H
D
I
I
H
T
E
K
S
L
T
L
V
F
E
Y
L
D
K
D
L
K
Q
Y
L
D
D
C
G
N
I
I
N
M
H
N
V
K
L
F
L
F
Q
L
L
R
G
L
A
Y
C
H
R
Q
K
V
L
H
R
D
L
K
P
Q
N
L
L
I
N
E
R
G
E
L
K
L
A
D
F
G
L
A
R
A
------------
V
T
L
W
Y
R
P
P
D
I
L
L
G
S
T
D
Y
S
T
Q
I
D
M
W
G
V
G
C
I
F
Y
E
M
A
T
G
R
P
L
F
P
G
S
T
V
E
E
Q
L
H
F
I
F
R
I
L
G
T
P
T
E
E
T
W
P
G
I
L
S
N
E
E
F
K
T
Y
N
Y
P
K
Y
R
A
E
A
L
L
S
H
A
P
R
L
D
S
D
G
A
D
L
L
T
K
L
L
Q
F
E
G
R
N
R
I
S
A
E
D
A
M
K
H
P
F
F
L
S
L
G
E
R
I
H
K
L
P
D
T
T
S
I
F
A
L
K
E
I
Q
L
Q
K
E
A
S
---------------------